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Source

smithery/adaptyvbio

18 skills · 0 combined installs

Skills from this source

#
Skill
Source
8W Activity
Installs
1
alphafold Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequence…
smithery/adaptyvbio
0
2
bindcraft End-to-end binder design using BindCraft hallucination. Use this skill when: (1) Designing protein binders with built…
smithery/adaptyvbio
0
3
binder-design Guidance for choosing the right protein binder design tool. Use this skill when: (1) Deciding between BoltzGen, BindC…
smithery/adaptyvbio
0
4
binding-characterization Guidance for SPR and BLI binding characterization experiments. Use when: (1) Planning binding kinetics experiments, (…
smithery/adaptyvbio
0
5
boltz Structure prediction using Boltz-1/Boltz-2, an open biomolecular structure predictor. Use this skill when: (1) Predic…
smithery/adaptyvbio
0
6
boltzgen All-atom protein design using BoltzGen diffusion model. Use this skill when: (1) Need side-chain aware design from th…
smithery/adaptyvbio
0
7
campaign-manager Goal-oriented binder design campaign planning and health assessment. Use this skill when: (1) Planning a complete bin…
smithery/adaptyvbio
0
8
cell-free-expression Guidance for cell-free protein synthesis (CFPS) optimization. Use when: (1) Planning CFPS experiments, (2) Troublesho…
smithery/adaptyvbio
0
9
chai Structure prediction using Chai-1, a foundation model for molecular structure. Use this skill when: (1) Predicting pr…
smithery/adaptyvbio
0
10
foldseek Structure similarity search with Foldseek. Use this skill when: (1) Finding similar structures in PDB/AFDB databases,…
smithery/adaptyvbio
0
11
ipsae Binder design ranking using ipSAE (interprotein Score from Aligned Errors). Use this skill when: (1) Ranking binder d…
smithery/adaptyvbio
0
12
ligandmpnn Ligand-aware protein sequence design using LigandMPNN. Use this skill when: (1) Designing sequences around small mole…
smithery/adaptyvbio
0
13
pdb Fetch and analyze protein structures from RCSB PDB. Use this skill when: (1) Need to download a structure by PDB ID, …
smithery/adaptyvbio
0
14
protein-design-workflow End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2)…
smithery/adaptyvbio
0
15
proteinmpnn Design protein sequences using ProteinMPNN inverse folding. Use this skill when: (1) Designing sequences for RFdiffus…
smithery/adaptyvbio
0
16
rfdiffusion Generate protein backbones using RFdiffusion, a diffusion-based generative model for de novo protein structure genera…
smithery/adaptyvbio
0
17
solublempnn Solubility-optimized protein sequence design using SolubleMPNN. Use this skill when: (1) Designing for E. coli expres…
smithery/adaptyvbio
0
18
uniprot Access UniProt for protein sequence and annotation retrieval. Use this skill when: (1) Looking up protein sequences b…
smithery/adaptyvbio
0