k-dense-ai/scientific-agent-skills

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uspto-database Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, …

k-dense-ai/scientific-agent-skills

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zinc-database Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for doc…

k-dense-ai/scientific-agent-skills

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bindingdb-database Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), comp…

k-dense-ai/scientific-agent-skills

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gtex-database Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative tr…

k-dense-ai/scientific-agent-skills

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interpro-database Query InterPro for protein family, domain, and functional site annotations. Integrates Pfam, PANTHER, PRINTS, SMART, …

k-dense-ai/scientific-agent-skills

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cbioportal-database Query cBioPortal for cancer genomics data including somatic mutations, copy number alterations, gene expression, and …

k-dense-ai/scientific-agent-skills

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gnomad-database Query gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint scores (pLI, LOEUF),…

k-dense-ai/scientific-agent-skills

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jaspar-database Query JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs). Search by TF name, species, or class;…

k-dense-ai/scientific-agent-skills

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monarch-database Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM,…

k-dense-ai/scientific-agent-skills

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arxiv-database Search and retrieve preprints from arXiv via the Atom API. Use this skill when searching for papers in physics, mathe…

k-dense-ai/scientific-agent-skills

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writing Use this skill to create high-quality academic papers, literature reviews, grant proposals, clinical reports, and oth…

k-dense-ai/scientific-agent-skills

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pymc-bayesian-modeling Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, post…

k-dense-ai/scientific-agent-skills

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planning-with-files Implements Manus-style file-based planning to organize and track progress on complex tasks. Creates task_plan.md, fin…

k-dense-ai/scientific-agent-skills

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biomni biomni — an installable skill for AI agents, published by k-dense-ai/scientific-agent-skills.

k-dense-ai/scientific-agent-skills

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