SkillsAdd

gptomics/bioskills · Archived

bio-spatial-transcriptomics-high-resolution-binning

Reconstructs single cells from sub-cellular spatial capture units (Visium HD 2um bins, Stereo-seq DNB spots, Slide-seqV2 beads) by aggregating bins UP into…

First seen Aug 14, 2026

Installation

$ npx skills add https://github.com/gptomics/bioskills
View on skills.sh ↗ GitHub repository ↗

Stronger alternatives

This repository is archived — consider an actively maintained alternative.

bioskills Same source · more installs
gptomics/bioskills

Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant ca…

243 installs
clawhub-installer Same source · more installs
gptomics/bioskills

Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant ca…

10 installs
bio-single-cell-batch-integration Same source · more installs
gptomics/bioskills

Integrate multiple scRNA-seq samples or batches with Harmony, scVI/scANVI, Seurat (CCA/RPCA), f…

7 installs
bio-workflows-rnaseq-to-de Same source · more installs
gptomics/bioskills

Orchestrates the end-to-end bulk RNA-seq differential-expression pipeline from FASTQ to an anno…

6 installs

Similar popular skills

Related neighbors and high-traction skills in the same topics — useful to compare before installing.

tooluniverse-spatial-transcriptomics Similar name
mims-harvard/tooluniverse

Spatial transcriptomics analysis — Visium, MERFISH, seqFISH, Slide-seq.

391 installs

Also in this package

Other skills from gptomics/bioskills · top by installs.

npx skills add https://github.com/gptomics/bioskills
bioskills 243 clawhub-installer 10 bio-single-cell-batch-integration 7 bio-workflows-rnaseq-to-de 6 bio-workflows-scrnaseq-pipeline 6 bio-metagenomics-kraken 5 bio-pathway-reactome 5 bio-data-visualization-genome-tracks 5 bio-read-qc-fastp-workflow 5 bio-data-visualization-specialized-omics-plots 5

Browse all from gptomics/bioskills

More details

Agent compatibility

Declared targets from SKILL.md / docs. Unmarked agents are not listed — the skill may still install via the CLI.

Claude Code Not declared
Cursor Not declared
Codex Not declared
GitHub Copilot Not declared
Windsurf Not declared
Gemini CLI Not declared
Cline Not declared
OpenCode Not declared

Repository health

Stars 1.2K
License LICENSE
Default branch main
Open issues 0
Status Archived

History

  1. First seen on skills.sh
  2. First recorded snapshot · 1 installs