davila7/claude-code-templates

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pysam Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, c…

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qutip Quantum mechanics simulations and analysis using QuTiP (Quantum Toolbox in Python). Use when working with quantum sys…

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template-skill Replace with description of the skill and when Claude should use it.

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gcp-cloud-run Specialized skill for building production-ready serverless applications on GCP. Covers Cloud Run services (containeri…

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qiskit Comprehensive quantum computing toolkit for building, optimizing, and executing quantum circuits. Use when working wi…

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Wireshark Network Traffic Analysis This skill should be used when the user asks to "analyze network traffic with Wireshark", "capture packets for troubl…

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playwright-e2e-builder Plan and build comprehensive Playwright E2E test suites with Page Object Model, authentication state persistence, cus…

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internal-comms A set of resources to help me write all kinds of internal communications, using the formats that my company likes to …

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Red Team Tools and Methodology This skill should be used when the user asks to "follow red team methodology", "perform bug bounty hunting", "automat…

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professional-communication Guide technical communication for software developers. Covers email structure, team messaging etiquette, meeting agen…

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Burp Suite Web Application Testing This skill should be used when the user asks to "intercept HTTP traffic", "modify web requests", "use Burp Suite for …

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datacommons-client Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use …

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heygen-best-practices Best practices for HeyGen - AI avatar video creation API

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hmdb-database Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biom…

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brenda-database Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data…

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clerk-auth Expert patterns for Clerk auth implementation, middleware, organizations, webhooks, and user sync Use when: adding au…

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kaizen Guide for continuous improvement, error proofing, and standardization. Use this skill when the user wants to improve …

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lamindb This skill should be used when working with LaminDB, an open-source data framework for biology that makes data querya…

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nosql-expert Expert guidance for distributed NoSQL databases (Cassandra, DynamoDB). Focuses on mental models, query-first modeling…

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umap-learn UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HD…

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cellxgene-census Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with …

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opentargets-database Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetic…

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pyopenms Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflow…

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security-best-practices Perform language and framework specific security best-practice reviews and suggest improvements. Trigger only when th…

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deeptools NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), …

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popup-cro When the user wants to create or optimize popups, modals, overlays, slide-ins, or banners for conversion purposes. Al…

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Shodan Reconnaissance and Pentesting This skill should be used when the user asks to "search for exposed devices on the internet," "perform Shodan reconna…

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arboreto Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use wh…

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capa-officer Senior CAPA Officer specialist for managing Corrective and Preventive Actions within Quality Management Systems. Prov…

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pydeseq2 Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR co…

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31

histolab Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathol…

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neuropixels-analysis Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike s…

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SQLMap Database Penetration Testing This skill should be used when the user asks to "automate SQL injection testing," "enumerate database structure," "ex…

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benchling-integration Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build…

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Cloud Penetration Testing This skill should be used when the user asks to "perform cloud penetration testing", "assess Azure or AWS or GCP secu…

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cosmic-database Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusi…

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ena-database Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by a…

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hypogenic Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hy…

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pennylane Cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Enables buildin…

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web-quality-audit Comprehensive web quality audit covering performance, accessibility, SEO, and best practices. Use when asked to "audi…

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hubspot-integration Expert patterns for HubSpot CRM integration including OAuth authentication, CRM objects, associations, batch operatio…

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naming-analyzer Suggest better variable, function, and class names based on context and conventions.

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Plugin Structure This skill should be used when the user asks to "create a plugin", "scaffold a plugin", "understand plugin structure"…

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ship-learn-next Transform learning content (like YouTube transcripts, articles, tutorials) into actionable implementation plans using…

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twilio-communications Build communication features with Twilio: SMS messaging, voice calls, WhatsApp Business API, and user verification (2…

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zinc-database Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for doc…

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azure-functions Expert patterns for Azure Functions development including isolated worker model, Durable Functions orchestration, col…

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cirq Quantum computing framework for building, simulating, optimizing, and executing quantum circuits. Use this skill when…

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Cross-Site Scripting and HTML Injection Testing This skill should be used when the user asks to "test for XSS vulnerabilities", "perform cross-site scripting attacks…

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esm Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequenc…

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