davila7/claude-code-templates

1

simpo-training Simple Preference Optimization for LLM alignment. Reference-free alternative to DPO with better performance (+6.4 poi…

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281

2

gene-database Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenot…

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278

3

uniprot-database Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workf…

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278

4

firecrawl-scraper Deep web scraping, screenshots, PDF parsing, and website crawling using Firecrawl API

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276

5

meme-factory Generate memes using the memegen.link API. Use when users request memes, want to add humor to content, or need visual…

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274

6

simpy Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with…

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274

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slack-gif-creator Knowledge and utilities for creating animated GIFs optimized for Slack. Provides constraints, validation tools, and a…

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metabolomics-workbench-database Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data,…

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clinpgx-database Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele f…

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10

diffdock Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual s…

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268

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file-uploads Expert at handling file uploads and cloud storage. Covers S3, Cloudflare R2, presigned URLs, multipart uploads, and i…

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268

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tavily-web Web search, content extraction, crawling, and research capabilities using Tavily API

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268

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gget CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gen…

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265

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string-database Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichm…

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265

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clinvar-database Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classification…

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crafting-effective-readmes Use when writing or improving README files. Not all READMEs are the same — provides templates and guidance matched to…

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geo-fundamentals Generative Engine Optimization for AI search engines (ChatGPT, Claude, Perplexity).

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18

core-components Core component library and design system patterns. Use when building UI, using design tokens, or working with the com…

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260

19

reactome-database Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interacti…

davila7/claude-code-templates

260

20

shopify-apps Expert patterns for Shopify app development including Remix/React Router apps, embedded apps with App Bridge, webhook…

davila7/claude-code-templates

260

21

concise-planning Use when a user asks for a plan for a coding task, to generate a clear, actionable, and atomic checklist.

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258

22

scvi-tools This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, sc…

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258

23

postgres-schema-design Comprehensive PostgreSQL-specific table design reference covering data types, indexing, constraints, performance patt…

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257

24

session-handoff Creates comprehensive handoff documents for seamless AI agent session transfers. Triggered when: (1) user requests ha…

davila7/claude-code-templates

257

25

API Fuzzing for Bug Bounty This skill should be used when the user asks to "test API security", "fuzz APIs", "find IDOR vulnerabilities", "test …

davila7/claude-code-templates

256

26

test-fixing Run tests and systematically fix all failing tests using smart error grouping. Use when user asks to fix failing test…

davila7/claude-code-templates

256

27

graphql GraphQL gives clients exactly the data they need - no more, no less. One endpoint, typed schema, introspection. But t…

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255

28

obsidian-clipper-template-creator Guide for creating templates for the Obsidian Web Clipper. Use when you want to create a new clipping template, under…

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29

dask Parallel/distributed computing. Scale pandas/NumPy beyond memory, parallel DataFrames/Arrays, multi-file processing, …

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254

30

ensembl-database Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparat…

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253

31

Pentest Commands This skill should be used when the user asks to "run pentest commands", "scan with nmap", "use metasploit exploits", …

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253

32

denario Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publi…

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252

33

Ethical Hacking Methodology This skill should be used when the user asks to "learn ethical hacking", "understand penetration testing lifecycle", …

davila7/claude-code-templates

252

34

iterate-pr Iterate on a PR until CI passes. Use when you need to fix CI failures, address review feedback, or continuously push …

davila7/claude-code-templates

252

35

doc-coauthoring Guide users through a structured workflow for co-authoring documentation. Use when user wants to write documentation,…

davila7/claude-code-templates

251

36

personal-tool-builder Expert in building custom tools that solve your own problems first. The best products often start as personal tools -…

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248

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Plugin Settings This skill should be used when the user asks about "plugin settings", "store plugin configuration", "user-configurabl…

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Linux Production Shell Scripts This skill should be used when the user asks to "create bash scripts", "automate Linux tasks", "monitor system resour…

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247

39

medchem Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexit…

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247

40

PDF Processing Extract text and tables from PDF files, fill forms, merge documents. Use when working with PDF files or when the user…

davila7/claude-code-templates

247

41

adaptyv Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing exper…

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246

42

cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

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43

torchdrug Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasonin…

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44

pylabrobot Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, cent…

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45

zarr-python Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatib…

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46

deployment-procedures Production deployment principles and decision-making. Safe deployment workflows, rollback strategies, and verificatio…

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47

cc-skill-strategic-compact Development skill from everything-claude-code

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48

cc-skill-project-guidelines-example Project Guidelines Skill (Example)

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49

gepetto Creates detailed, sectionized implementation plans through research, stakeholder interviews, and multi-LLM review. Us…

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50

pufferlib This skill should be used when working with reinforcement learning tasks including high-performance RL training, cust…

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