Source

wu-yc/labclaw

208 skills · 4.9K combined installs

Skills from this source

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Skill
Source
8W Activity
Installs
1
generate_cell_analysis_charts Domain-specialized chart generator for cell biology video analysis outputs. Consumes structured JSON from analyze_lab…
wu-yc/labclaw
22
2
geniml This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for tra…
wu-yc/labclaw
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3
geo-database Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), r…
wu-yc/labclaw
22
4
geopandas Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when …
wu-yc/labclaw
22
5
get-available-resources This skill should be used at the start of any computationally intensive scientific task to detect and report availabl…
wu-yc/labclaw
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6
gget Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold …
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gtars High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic re…
wu-yc/labclaw
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8
gwas-database Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-va…
wu-yc/labclaw
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9
hands-3d-pose High-quality 3D hand pose estimation for egocentric videos from ECCV 2024 (ap229997/hands). Provides 3D joint keypoin…
wu-yc/labclaw
22
10
hmdb-database Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biom…
wu-yc/labclaw
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11
hypogenic Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically explo…
wu-yc/labclaw
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12
iso-13485-certification Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Syste…
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13
labarchive-integration Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate wi…
wu-yc/labclaw
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14
lamindb This skill should be used when working with LaminDB, an open-source data framework for biology that makes data querya…
wu-yc/labclaw
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15
latchbio-integration Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serve…
wu-yc/labclaw
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16
latex-posters Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference pre…
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17
literature-search Comprehensive scientific literature search across PubMed, arXiv, bioRxiv, medRxiv. Natural language queries powered b…
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18
matplotlib Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, cr…
wu-yc/labclaw
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19
metabolomics-workbench-database Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data,…
wu-yc/labclaw
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20
networkx Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when workin…
wu-yc/labclaw
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21
neuropixels-analysis Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike s…
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pathml Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence…
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23
pdb-database Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/…
wu-yc/labclaw
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24
pydicom Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when rea…
wu-yc/labclaw
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25
pyhealth Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data…
wu-yc/labclaw
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26
pylabrobot Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, …
wu-yc/labclaw
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27
pymoo Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZD…
wu-yc/labclaw
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28
pyopenms Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification,…
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29
pysam Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, c…
wu-yc/labclaw
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30
pytorch-lightning Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for mult…
wu-yc/labclaw
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31
realtime_protocol_guidance_prompts Generates short, imperative guidance prompts for the next experimental step from current video frame and protocol con…
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research-lookup Look up current research information using Perplexity Sonar Pro Search or Sonar Reasoning Pro models through OpenRout…
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robot_protocol_step_generator Converts natural language or PDF protocol text into executable step sequences for Opentrons or PyLabRobot. Parses pro…
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34
scikit-bio Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), …
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35
scikit-survival Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skil…
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36
scvi-tools Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learn…
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37
seaborn Statistical visualization with pandas integration. Use for quick exploration of distributions, relationships, and cat…
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38
shap Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining …
wu-yc/labclaw
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39
statsmodels Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with …
wu-yc/labclaw
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40
string-database Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichm…
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41
sympy Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation t…
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42
tooluniverse-clinical-trial-design Strategic clinical trial design feasibility assessment using ToolUniverse. Evaluates patient population sizing, bioma…
wu-yc/labclaw
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tooluniverse-epigenomics Production-ready genomics and epigenomics data processing for BixBench questions. Handles methylation array analysis …
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44
tooluniverse-expression-data-retrieval Retrieves gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation, experiment qu…
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45
tooluniverse-gwas-snp-interpretation Interpret genetic variants (SNPs) from GWAS studies by aggregating evidence from multiple databases (GWAS Catalog, Op…
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tooluniverse-image-analysis Production-ready microscopy image analysis and quantitative imaging data skill for colony morphometry, cell counting,…
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tooluniverse-immune-repertoire-analysis Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data. Analyze TCR/BCR repertoires …
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tooluniverse-metabolomics Comprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching metabolomics …
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49
tooluniverse-metabolomics-analysis Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux. …
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tooluniverse-polygenic-risk-score Build and interpret polygenic risk scores (PRS) for complex diseases using GWAS summary statistics. Calculates geneti…
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