Source

wu-yc/labclaw

208 skills · 4.9K combined installs

Skills from this source

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Skill

Source

8W Activity

Installs

tooluniverse-proteomics-analysis Analyze mass spectrometry proteomics data including protein quantification, differential expression, post-translation…

tooluniverse-single-cell Production-ready single-cell and expression matrix analysis using scanpy, anndata, and scipy. Performs scRNA-seq QC, …

tooluniverse-statistical-modeling Perform statistical modeling and regression analysis on biomedical datasets. Supports linear regression, logistic reg…

tooluniverse-target-research Gather comprehensive biological target intelligence from 9 parallel research paths covering protein info, structure, …

adaptyv Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing exper…

anndata Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with …

chembl-database Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactiv…

clinical-trials-search Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu s…

clinicaltrials-database Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial det…

detect_common_wetlab_errors Detects common wet-lab procedural and safety errors from XR or fixed-camera lab video. Identifies pipette volume devi…

export_experiment_data_to_excel Exports any structured experimental data (JSON, tables, time series) to well-formatted Excel (.xlsx) files. Auto-name…

handtracking Real-time hand detection in egocentric videos using victordibia/handtracking. Outputs bounding boxes for hands, speci…

hot3d HOT3D (Hand-Object 3D Dataset) by Meta Facebook - multi-view egocentric hand and object 3D tracking for Aria/Quest sm…

molfeat Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert S…

opentrons-integration Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardw…

plotly Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashbo…

Protein Interaction Network Analysis Analyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. Maps protein identifiers, r…

pubchem-database Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarit…

reactome-database Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interacti…

scientific-slides Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentatio…

tooluniverse-clinical-trial-matching AI-driven patient-to-trial matching for precision medicine and oncology. Given a patient profile (disease, molecular …

tooluniverse-drug-drug-interaction Comprehensive drug-drug interaction (DDI) prediction and risk assessment. Analyzes interaction mechanisms (CYP450, tr…

tooluniverse-gene-enrichment Perform comprehensive gene enrichment and pathway analysis using gseapy (ORA and GSEA), PANTHER, STRING, Reactome, an…

tooluniverse-gwas-study-explorer Compare GWAS studies, perform meta-analyses, and assess replication across cohorts. Integrates NHGRI-EBI GWAS Catalog…

tooluniverse-gwas-trait-to-gene Discover genes associated with diseases and traits using GWAS data from the GWAS Catalog (500,000+ associations) and …

tooluniverse-infectious-disease Rapid pathogen characterization and drug repurposing analysis for infectious disease outbreaks. Identifies pathogen t…

tooluniverse-phylogenetics Production-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and evolutionary …

tooluniverse-protein-structure-retrieval Retrieves protein structure data from RCSB PDB, PDBe, and AlphaFold with protein disambiguation, quality assessment, …

tooluniverse-rare-disease-diagnosis Provide differential diagnosis for patients with suspected rare diseases based on phenotype and genetic data. Matches…

tooluniverse-rnaseq-deseq2 Production-ready RNA-seq differential expression analysis using PyDESeq2. Performs DESeq2 normalization, dispersion e…

torchdrug PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug …

umap-learn UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HD…

voice_command_to_skill Maps natural language voice commands to concrete LabClaw skill invocations. Parses ASR output, identifies intent, sel…

zinc-database Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for doc…

aeon This skill should be used for time series machine learning tasks including classification, regression, clustering, fo…

analyze_lab_video_cell_behavior Automated cell behavior analysis from microscopy or XR lab recordings. Classifies cell motion phenotypes (migration, …

biopython Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogeneti…

clinical-decision-support Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, in…

clinical-reports Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/patholog…

clinpgx-database Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele f…

clinvar-database Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classification…

datamol Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery …

esm Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequenc…

hand-tracking-toolkit Facebook Research Hand Tracking Challenge Toolkit - evaluation and visualization tools for 3D hand tracking. Supports…

histolab Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, …

hypothesis-generation Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to …

kegg-database Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug …

literature-review Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Seman…

matchms Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarit…

medrxiv-search Search medRxiv medical preprints with natural language queries. Powered by Valyu semantic search.