smithery/hxk622

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adaptyv Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing exper…

smithery/hxk622

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anndata Data structure for annotated matrices in single-cell analysis.

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cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

smithery/hxk622

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drugbank-database Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions,…

smithery/hxk622

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ensembl-database Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparat…

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etetoolkit Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NC…

smithery/hxk622

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financial_research 面向股票/行业/宏观的金融研究技能，结合结构化金融数据（OpenBB/AkShare）与多源信息验证，生成带引用与?

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flowio Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert t…

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gene-database Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenot…

smithery/hxk622

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kegg-database Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug …

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matlab MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computi…

smithery/hxk622

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medchem Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexit…

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pathml Full-featured computational pathology toolkit.

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ppt_generation 智能 PPT 生成能力，支持从研究报告一键生成演示文稿。基于 Marp Markdown 引擎，支持专业模板、数据图表、PDF 导出。适用于…

smithery/hxk622

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pptx-posters Create research posters using HTML/CSS that can be exported to PDF or PPTX.

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pubchem-database Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarit…

smithery/hxk622

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pyopenms Complete mass spectrometry analysis platform.

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reactome-database Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interacti…

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rowan Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa…

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scanpy Standard single-cell RNA-seq analysis pipeline.

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scikit-survival Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival.

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string-database Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichm…

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zinc-database Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for doc…

smithery/hxk622

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