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Skill

Source

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depmap k-dense-ai/scientific--skills/depmap Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivi…

k-dense-ai/scientific--skills

phylogenetics k-dense-ai/scientific--skills/phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (…

k-dense-ai/scientific--skills

scvelo k-dense-ai/scientific--skills/scvelo RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajec…

k-dense-ai/scientific--skills

treatment-plans k-dense-ai/scientific--skills/treatment-plans Format and structurally validate local treatment-plan documentation after clinical decisions have already been suppli…

k-dense-ai/scientific--skills

diffdock k-dense-ai/scientific--skills/diffdock DiffDock and DiffDock-L molecular docking. Use for protein-small-molecule pose prediction from PDB or sequence plus S…

k-dense-ai/scientific--skills

medchem k-dense-ai/scientific--skills/medchem Medicinal chemistry filters for compound triage. Apply drug-likeness rules (Lipinski, Veber, CNS), structural alert c…

k-dense-ai/scientific--skills

geniml k-dense-ai/scientific--skills/geniml Use Geniml for audited local genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEm…

k-dense-ai/scientific--skills

unreal-engine-cpp-pro sickn33/ic-awesome-skills/unreal-engine-cpp-pro Expert guide for Unreal Engine 5.x C++ development, covering UObject hygiene, performance patterns, and best practice…

sickn33/ic-awesome-skills

pytdc k-dense-ai/scientific--skills/pytdc Use Therapeutics Data Commons through the PyTDC Python package for registry discovery, approved dataset access, task-…

k-dense-ai/scientific--skills

flowio k-dense-ai/scientific--skills/flowio Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO.

k-dense-ai/scientific--skills

gtars k-dense-ai/scientific--skills/gtars Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenizatio…

k-dense-ai/scientific--skills

molfeat k-dense-ai/scientific--skills/molfeat Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert S…

k-dense-ai/scientific--skills

pyopenms k-dense-ai/scientific--skills/pyopenms Complete mass spectrometry analysis platform.

k-dense-ai/scientific--skills

etetoolkit k-dense-ai/scientific--skills/etetoolkit Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4.

k-dense-ai/scientific--skills

histolab k-dense-ai/scientific--skills/histolab Lightweight WSI tile extraction and preprocessing.

k-dense-ai/scientific--skills

matchms k-dense-ai/scientific--skills/matchms Process, clean, compare, and search tandem mass spectra with matchms.

k-dense-ai/scientific--skills

usfiscaldata k-dense-ai/scientific--skills/usfiscaldata Query the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (…

k-dense-ai/scientific--skills

pennylane k-dense-ai/scientific--skills/pennylane Hardware-agnostic quantum ML framework with automatic differentiation.

k-dense-ai/scientific--skills

protocolsio-integration k-dense-ai/scientific--skills/protocolsio-integration Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing…

k-dense-ai/scientific--skills

tiledbvcf k-dense-ai/scientific--skills/tiledbvcf Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample …

k-dense-ai/scientific--skills

cirq k-dense-ai/scientific--skills/cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or…

k-dense-ai/scientific--skills

labarchive-integration k-dense-ai/scientific--skills/labarchive-integration Securely integrate with the official LabArchives ELN REST-like API and Inventory API v1. Use for regional endpoint se…

k-dense-ai/scientific--skills

opentrons-integration k-dense-ai/scientific--skills/opentrons-integration Author, review, migrate, simulate, and troubleshoot official Opentrons Python Protocol API v2 protocols for Flex and …

k-dense-ai/scientific--skills

rowan k-dense-ai/scientific--skills/rowan Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa a…

k-dense-ai/scientific--skills

cobrapy k-dense-ai/scientific--skills/cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

k-dense-ai/scientific--skills

qutip k-dense-ai/scientific--skills/qutip Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-st…

k-dense-ai/scientific--skills

architecture sickn33/ic-awesome-skills/architecture Architectural decision-making framework. Requirements analysis, trade-off evaluation, ADR documentation. Use when mak…

sickn33/ic-awesome-skills

cc-skill-frontend-patterns sickn33/ic-awesome-skills/cc-skill-frontend-patterns Frontend development patterns for React, Next.js, state management, performance optimization, and UI best practices.

sickn33/ic-awesome-skills

test-driven-development sickn33/ic-awesome-skills/test-driven-development Use a failing behavioral test to guide a feature or bug fix, then implement and refactor with relevant regression che…

sickn33/ic-awesome-skills

workflow-automation ruvnet/ruflo/workflow-automation Workflow creation, execution, and template management. Automates complex multi-step processes with coordination…

service-itsm-ic-setup-force-studio-configure forcedotcom/sf-skills/service-itsm-ic-setup-force-studio-configure Enable the force for IT Service Salesforce Go feature toggles (force Studio, Einstein Generative AI, the pa…

forcedotcom/sf-skills

api-patterns sickn33/ic-awesome-skills/api-patterns API design principles and decision-making. REST vs GraphQL vs tRPC selection, response formats, versioning, paginatio…

sickn33/ic-awesome-skills

prompt-engineering sickn33/ic-awesome-skills/prompt-engineering Expert guide on prompt engineering patterns, best practices, and optimization techniques. Use when user wants to impr…

sickn33/ic-awesome-skills

lamindb k-dense-ai/scientific--skills/lamindb Use when working with LaminDB, the open-source lineage-native lakehouse for biological datasets and models.

k-dense-ai/scientific--skills

neuropixels-analysis k-dense-ai/scientific--skills/neuropixels-analysis Analyze Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB d…

k-dense-ai/scientific--skills

qiskit k-dense-ai/scientific--skills/qiskit Build, simulate, transpile, and execute quantum circuits with Qiskit and IBM Quantum Runtime.

k-dense-ai/scientific--skills

dnanexus-integration k-dense-ai/scientific--skills/dnanexus-integration Build and operate reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, …

k-dense-ai/scientific--skills

polars-bio k-dense-ai/scientific--skills/polars-bio High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merg…

k-dense-ai/scientific--skills

pylabrobot k-dense-ai/scientific--skills/pylabrobot Develop and review PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-dev…

k-dense-ai/scientific--skills

code-review-checklist sickn33/ic-awesome-skills/code-review-checklist Comprehensive checklist for conducting thorough code reviews covering functionality, security, performance, and maint…

sickn33/ic-awesome-skills

latchbio-integration k-dense-ai/scientific--skills/latchbio-integration Build, register, debug, and operate bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Regis…

k-dense-ai/scientific--skills

primekg k-dense-ai/scientific--skills/primekg Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, disease…

k-dense-ai/scientific--skills

jenkins-pipeline aj-geddes/useful-ai-prompts/jenkins-pipeline Build Jenkins declarative and scripted pipelines with stages, s, parameters, and plugins. Implement multi-branch…

aj-geddes/useful-ai-prompts

omero-integration k-dense-ai/scientific--skills/omero-integration Securely inspect and automate microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, …

k-dense-ai/scientific--skills

glycoengineering k-dense-ai/scientific--skills/glycoengineering Analyze and engineer protein glycosylation.

k-dense-ai/scientific--skills

launch-sub- neolabhq/context-engineering-kit/launch-sub- Launch an intelligent sub- with automatic model selection based on task complexity, specialized matching, …

neolabhq/context-engineering-kit

service-itsm-teams-debug forcedotcom/sf-skills/service-itsm-teams-debug Debug and diagnose Microsoft Teams for Employee Service (ITSM) configuration failures — run a pass/fail validation ch…

forcedotcom/sf-skills

typescript-advanced-types wshobson/s/typescript-advanced-types

security boshu2/ops/security Run authorized repository security scans for vulnerabilities, dependency risk, secrets, and binary policy. Triggers: …

superpowers-lab sickn33/ic-awesome-skills/superpowers-lab Lab environment for Claude superpowers

sickn33/ic-awesome-skills