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Skill

Source

Installs

cobrapy k-dense-ai/scientific-agent-/cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

k-dense-ai/scientific-agent-

depmap k-dense-ai/scientific-agent-/depmap Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivi…

k-dense-ai/scientific-agent-

medchem k-dense-ai/scientific-agent-/medchem Medicinal chemistry filters for compound triage. Apply drug-likeness rules (Lipinski, Veber, CNS), structural alert c…

k-dense-ai/scientific-agent-

pathml k-dense-ai/scientific-agent-/pathml Use PathML for local, research-only computational pathology workflows: load and tile slides, build preprocessing and …

k-dense-ai/scientific-agent-

molfeat k-dense-ai/scientific-agent-/molfeat Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert S…

k-dense-ai/scientific-agent-

treatment-plans k-dense-ai/scientific-agent-/treatment-plans Format and structurally validate local treatment-plan documentation after clinical decisions have already been suppli…

k-dense-ai/scientific-agent-

whose-number-is-this useosint//whose-number-is-this >- Investigate a phone number — E.164 normalisation with libphonenumber, phoneinfoga scanning, carrier and line-type …

geniml k-dense-ai/scientific-agent-/geniml Use Geniml for audited local genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEm…

k-dense-ai/scientific-agent-

labarchive-integration k-dense-ai/scientific-agent-/labarchive-integration Securely integrate with the official LabArchives ELN REST-like API and Inventory API v1. Use for regional endpoint se…

k-dense-ai/scientific-agent-

pennylane k-dense-ai/scientific-agent-/pennylane Hardware-agnostic quantum ML framework with automatic differentiation.

k-dense-ai/scientific-agent-

etetoolkit k-dense-ai/scientific-agent-/etetoolkit Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4.

k-dense-ai/scientific-agent-

flowio k-dense-ai/scientific-agent-/flowio Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO.

k-dense-ai/scientific-agent-

pytdc k-dense-ai/scientific-agent-/pytdc Use Therapeutics Data Commons through the PyTDC Python package for registry discovery, approved dataset access, task-…

k-dense-ai/scientific-agent-

secrets-in-file-metadata useosint//secrets-in-file-metadata >- Extract and interpret embedded file metadata with exiftool — EXIF GPS coordinates, camera make, model and serial, …

video-analysis starchild-ai-agent/official-/video-analysis Video understanding for any model \u2014 native passthrough for small\ \ files,\nframe extraction + audio transcripti…

starchild-ai-agent/official-

phylogenetics k-dense-ai/scientific-agent-/phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (…

k-dense-ai/scientific-agent-

scvelo k-dense-ai/scientific-agent-/scvelo RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajec…

k-dense-ai/scientific-agent-

om-ux-shape open-mercato//om-ux-shape Turn a vague product, UI/UX, or AI feature idea into a decided direction. Use when shaping a feature, simplifying an …

protocolsio-integration k-dense-ai/scientific-agent-/protocolsio-integration Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing…

k-dense-ai/scientific-agent-

usfiscaldata k-dense-ai/scientific-agent-/usfiscaldata Query the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (…

k-dense-ai/scientific-agent-

matchms k-dense-ai/scientific-agent-/matchms Process, clean, compare, and search tandem mass spectra with matchms.

k-dense-ai/scientific-agent-

bright-data-best-practices brightdata//bright-data-best-practices Build production-ready Bright Data integrations with best practices baked in.

graphic-designer charlie947/social-media-/graphic-designer Create LinkedIn post graphics. Decides between an HTML/CSS structured graphic or an AI-generated infographic based on…

charlie947/social-media-

gtars k-dense-ai/scientific-agent-/gtars Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenizatio…

k-dense-ai/scientific-agent-

histolab k-dense-ai/scientific-agent-/histolab Lightweight WSI tile extraction and preprocessing.

k-dense-ai/scientific-agent-

lamindb k-dense-ai/scientific-agent-/lamindb Use when working with LaminDB, the open-source lineage-native lakehouse for biological datasets and models.

k-dense-ai/scientific-agent-

n8n-self-hosting czlonkowski/n8n-/n8n-self-hosting Deploy a production self-hosted n8n end-to-end to a fresh Linux VM over SSH, using Docker Compose behind a Caddy reve…

czlonkowski/n8n-

qiskit k-dense-ai/scientific-agent-/qiskit Build, simulate, transpile, and execute quantum circuits with Qiskit and IBM Quantum Runtime.

k-dense-ai/scientific-agent-

follow-the-crypto useosint//follow-the-crypto >- Trace cryptocurrency addresses and transactions on public blockchains using block explorers including Etherscan, B…

polars-bio k-dense-ai/scientific-agent-/polars-bio High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merg…

k-dense-ai/scientific-agent-

xlsx k-dense-ai/scientific-agent-/xlsx Create, edit, analyze, or convert Excel spreadsheets (.xlsx, .xlsm, .xltx) where the workbook file is the primary del…

k-dense-ai/scientific-agent-

neuropixels-analysis k-dense-ai/scientific-agent-/neuropixels-analysis Analyze Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB d…

k-dense-ai/scientific-agent-

pyopenms k-dense-ai/scientific-agent-/pyopenms Complete mass spectrometry analysis platform.

k-dense-ai/scientific-agent-

dnanexus-integration k-dense-ai/scientific-agent-/dnanexus-integration Build and operate reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, …

k-dense-ai/scientific-agent-

latchbio-integration k-dense-ai/scientific-agent-/latchbio-integration Build, register, debug, and operate bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Regis…

k-dense-ai/scientific-agent-

opentrons-integration k-dense-ai/scientific-agent-/opentrons-integration Author, review, migrate, simulate, and troubleshoot official Opentrons Python Protocol API v2 protocols for Flex and …

k-dense-ai/scientific-agent-

omero-integration k-dense-ai/scientific-agent-/omero-integration Securely inspect and automate microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, …

k-dense-ai/scientific-agent-

qutip k-dense-ai/scientific-agent-/qutip Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-st…

k-dense-ai/scientific-agent-

rowan k-dense-ai/scientific-agent-/rowan Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa a…

k-dense-ai/scientific-agent-

sequential-thinking mrgoonie/claudekit-/sequential-thinking Use when complex problems require systematic step-by-step reasoning with ability to revise thoughts, branch into alte…

mrgoonie/claudekit-

idea-generation lingzhi227/agent-research-/idea-generation Generate novel research ideas with iterative refinement and novelty checking against literature. Score ideas on Inter…

lingzhi227/agent-research-

paperzilla k-dense-ai/scientific-agent-/paperzilla Chat with your agent about projects, recommendations, and canonical papers in Paperzilla. Use when users ask for rece…

k-dense-ai/scientific-agent-

appwrite-cli appwrite//appwrite-cli How to use the Appwrite CLI well. Covers when to use appwrite.config.json vs `appwrite client`, pull/push vs one-shot…

rev-unicorn-debug p4nda0s/reverse-/rev-unicorn-debug Debug and emulate specific code fragments or functions using the Unicorn engine.

p4nda0s/reverse-

tiledbvcf k-dense-ai/scientific-agent-/tiledbvcf Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample …

k-dense-ai/scientific-agent-

pylabrobot k-dense-ai/scientific-agent-/pylabrobot Develop and review PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-dev…

k-dense-ai/scientific-agent-

qdrant-clients-sdk qdrant//qdrant-clients-sdk Qdrant provides client SDKs for various programming languages, allowing easy integration with Qdrant deployments.

glycoengineering k-dense-ai/scientific-agent-/glycoengineering Analyze and engineer protein glycosylation.

k-dense-ai/scientific-agent-

n8n-subworkflows czlonkowski/n8n-/n8n-subworkflows Build reusable, composable n8n sub-workflows. Use when extracting shared logic, building anything multi-step or reuse…

czlonkowski/n8n-

primekg k-dense-ai/scientific-agent-/primekg Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, disease…

k-dense-ai/scientific-agent-