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Skill

Source

Installs

scanpy k-dense-ai/scientific--skills/scanpy Standard single-cell RNA-seq analysis pipeline.

k-dense-ai/scientific--skills

image-tryon starchild-ai-/official-skills/image-tryon Virtual try-on: clothing, accessories, hairstyles, makeup, glasses, hats, shoes, watches. Use when the user wants to …

starchild-ai-/official-skills

p9 tanweai/pua/p9 P9 Tech Lead mode — write Task Prompts, manage P8 teams, never write code yourself. Use when user says 'P9模式'…

pufferlib k-dense-ai/scientific--skills/pufferlib Version-aware guidance for PufferLib reinforcement-learning environments, vectorization, policies, PuffeRL training, …

k-dense-ai/scientific--skills

deepchem k-dense-ai/scientific--skills/deepchem Molecular ML with diverse featurizers and pre-built datasets.

k-dense-ai/scientific--skills

deeptools k-dense-ai/scientific--skills/deeptools NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), …

k-dense-ai/scientific--skills

pydicom k-dense-ai/scientific--skills/pydicom Use pydicom to read, inspect, write, transform, and safely preflight local DICOM datasets and pixel data. Applies to …

k-dense-ai/scientific--skills

cellxgene-census k-dense-ai/scientific--skills/cellxgene-census Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.

k-dense-ai/scientific--skills

benchling-integration k-dense-ai/scientific--skills/benchling-integration Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling App…

k-dense-ai/scientific--skills

vaex k-dense-ai/scientific--skills/vaex Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM.

k-dense-ai/scientific--skills

vercel-deployment sickn33/ic-awesome-skills/vercel-deployment Expert knowledge for deploying to Vercel with Next.js

sickn33/ic-awesome-skills

datamol k-dense-ai/scientific--skills/datamol Pythonic wrapper around RDKit with simplified interface and sensible defaults.

k-dense-ai/scientific--skills

openshell-cli Official nvidia/openshell/openshell-cli Guide s through using the OpenShell CLI (openshell) for sandbox management, gateway registration, provider confi…

nvidia/openshell

backend-dev-guidelines sickn33/ic-awesome-skills/backend-dev-guidelines You are a senior backend engineer operating production-grade services under strict architectural and reliability cons…

sickn33/ic-awesome-skills

arboreto k-dense-ai/scientific--skills/arboreto Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).

k-dense-ai/scientific--skills

adaptyv k-dense-ai/scientific--skills/adaptyv How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieva…

k-dense-ai/scientific--skills

fluidsim k-dense-ai/scientific--skills/fluidsim Plan, configure, inspect, restart, and analyze bounded FluidSim computational-fluid-dynamics simulations with explici…

k-dense-ai/scientific--skills

molecular-dynamics k-dense-ai/scientific--skills/molecular-dynamics Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis.

k-dense-ai/scientific--skills

pydeseq2 k-dense-ai/scientific--skills/pydeseq2 Differential gene expression analysis for bulk RNA-seq with PyDESeq2, including formulaic designs, Wald tests, FDR co…

k-dense-ai/scientific--skills

contribute-skill fandhe-ai/-cli-skills/contribute-skill ローカルで改修した `skills/<skill-name>/` を upstream リポジトリ (Fandhe-AI/-cli-skills 等) へ PR として投稿する…

fandhe-ai/-cli-skills

imaging-data-commons k-dense-ai/scientific--skills/imaging-data-commons Query and download public cancer imaging data from NCI Imaging Data Commons.

k-dense-ai/scientific--skills

torchdrug k-dense-ai/scientific--skills/torchdrug Build and troubleshoot TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraini…

k-dense-ai/scientific--skills

pymatgen k-dense-ai/scientific--skills/pymatgen Analyze, validate, convert, and transform materials structures and computed materials data with current pymatgen APIs…

k-dense-ai/scientific--skills

pyhealth k-dense-ai/scientific--skills/pyhealth Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, …

k-dense-ai/scientific--skills

esm k-dense-ai/scientific--skills/esm Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFo…

k-dense-ai/scientific--skills

zarr-python k-dense-ai/scientific--skills/zarr-python Chunked N-D arrays for cloud storage (Zarr-Python 3). Compressed arrays, parallel I/O, S3/GCS via fsspec, NumPy/Dask/…

k-dense-ai/scientific--skills

neurokit2 k-dense-ai/scientific--skills/neurokit2 Use NeuroKit2 to build or audit reproducible research workflows for physiological time-series preprocessing, event/in…

k-dense-ai/scientific--skills

scvi-tools k-dense-ai/scientific--skills/scvi-tools Deep generative models for single-cell omics.

k-dense-ai/scientific--skills

dhdna-profiler k-dense-ai/scientific--skills/dhdna-profiler Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how…

k-dense-ai/scientific--skills

ui-design starchild-ai-/official-skills/ui-design UI/UX quality gate and build guide for every visual output — landing pages, dashboards, web apps, portfolios, and too…

starchild-ai-/official-skills

cirq k-dense-ai/scientific--skills/cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or…

k-dense-ai/scientific--skills

diffdock k-dense-ai/scientific--skills/diffdock DiffDock and DiffDock-L molecular docking. Use for protein-small-molecule pose prediction from PDB or sequence plus S…

k-dense-ai/scientific--skills

pysam k-dense-ai/scientific--skills/pysam Python/HTSlib workflows for genomic files. Use when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, F…

k-dense-ai/scientific--skills

cobrapy k-dense-ai/scientific--skills/cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

k-dense-ai/scientific--skills

depmap k-dense-ai/scientific--skills/depmap Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivi…

k-dense-ai/scientific--skills

medchem k-dense-ai/scientific--skills/medchem Medicinal chemistry filters for compound triage. Apply drug-likeness rules (Lipinski, Veber, CNS), structural alert c…

k-dense-ai/scientific--skills

pathml k-dense-ai/scientific--skills/pathml Use PathML for local, research-only computational pathology workflows: load and tile slides, build preprocessing and …

k-dense-ai/scientific--skills

molfeat k-dense-ai/scientific--skills/molfeat Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert S…

k-dense-ai/scientific--skills

treatment-plans k-dense-ai/scientific--skills/treatment-plans Format and structurally validate local treatment-plan documentation after clinical decisions have already been suppli…

k-dense-ai/scientific--skills

geniml k-dense-ai/scientific--skills/geniml Use Geniml for audited local genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEm…

k-dense-ai/scientific--skills

labarchive-integration k-dense-ai/scientific--skills/labarchive-integration Securely integrate with the official LabArchives ELN REST-like API and Inventory API v1. Use for regional endpoint se…

k-dense-ai/scientific--skills

pennylane k-dense-ai/scientific--skills/pennylane Hardware-agnostic quantum ML framework with automatic differentiation.

k-dense-ai/scientific--skills

etetoolkit k-dense-ai/scientific--skills/etetoolkit Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4.

k-dense-ai/scientific--skills

flowio k-dense-ai/scientific--skills/flowio Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO.

k-dense-ai/scientific--skills

pytdc k-dense-ai/scientific--skills/pytdc Use Therapeutics Data Commons through the PyTDC Python package for registry discovery, approved dataset access, task-…

k-dense-ai/scientific--skills

video-analysis starchild-ai-/official-skills/video-analysis Video understanding for any model \u2014 native passthrough for small\ \ files,\nframe extraction + audio transcripti…

starchild-ai-/official-skills

phylogenetics k-dense-ai/scientific--skills/phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (…

k-dense-ai/scientific--skills

scvelo k-dense-ai/scientific--skills/scvelo RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajec…

k-dense-ai/scientific--skills

protocolsio-integration k-dense-ai/scientific--skills/protocolsio-integration Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing…

k-dense-ai/scientific--skills

usfiscaldata k-dense-ai/scientific--skills/usfiscaldata Query the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (…

k-dense-ai/scientific--skills