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scanpy k-dense-ai/scientific--skills/scanpy Standard single-cell RNA-seq analysis pipeline.

k-dense-ai/scientific--skills

scikit-bio k-dense-ai/scientific--skills/scikit-bio Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), …

k-dense-ai/scientific--skills

scvi-tools k-dense-ai/scientific--skills/scvi-tools Deep generative models for single-cell omics.

k-dense-ai/scientific--skills

self-review lingzhi227/-research-skills/self-review Automatically review an academic paper using the NeurIPS review form with three reviewer personas, ensemble scoring, …

lingzhi227/-research-skills

simpy k-dense-ai/scientific--skills/simpy Build, inspect, test, and analyze bounded process-based discrete-event simulations with SimPy, including events, reso…

k-dense-ai/scientific--skills

slide-generation lingzhi227/-research-skills/slide-generation Convert a completed paper into presentation slides (Beamer LaTeX) or poster. Extract key figures, tables, equations, …

lingzhi227/-research-skills

symbolic-equation lingzhi227/-research-skills/symbolic-equation Discover scientific equations from data using LLM-guided evolutionary search (LLM-SR). Multi-island algorithm with so…

lingzhi227/-research-skills

tailwind-patterns sickn33/ic-awesome-skills/tailwind-patterns Tailwind CSS v4 principles. CSS-first configuration, container queries, modern patterns, design token architecture.

sickn33/ic-awesome-skills

timesfm-forecasting k-dense-ai/scientific--skills/timesfm-forecasting Zero-shot time series forecasting with Google's TimesFM foundation model.

k-dense-ai/scientific--skills

torchdrug k-dense-ai/scientific--skills/torchdrug Build and troubleshoot TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraini…

k-dense-ai/scientific--skills

vaex k-dense-ai/scientific--skills/vaex Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM.

k-dense-ai/scientific--skills

what-if-oracle k-dense-ai/scientific--skills/what-if-oracle Run structured What-If scenario analysis with 4–6 branch possibility exploration (best, likely, worst, wild card, con…

k-dense-ai/scientific--skills

workflow-automation sickn33/ic-awesome-skills/workflow-automation Workflow automation is the infrastructure that makes AI s reliable. Without durable execution, a network hiccup …

sickn33/ic-awesome-skills

worldcup starchild-ai-/official-skills/worldcup FIFA World Cup 2026 — match schedules, live scores, results, and the prediction game (place/cancel bets with points, …

starchild-ai-/official-skills

zarr-python k-dense-ai/scientific--skills/zarr-python Chunked N-D arrays for cloud storage (Zarr-Python 3). Compressed arrays, parallel I/O, S3/GCS via fsspec, NumPy/Dask/…

k-dense-ai/scientific--skills

capacitor-plugins capawesome-team/skills/capacitor-plugins Guides the through installing, configuring, and using Capacitor plugins from six sources — official Capacitor p…

capawesome-team/skills

sf-ai-force-observability jaganpro/sf-skills/sf-ai-force-observability force session tracing extraction and analysis. TRIGGER when: user extracts STDM data from Data Cloud, analyzes a…

jaganpro/sf-skills

workflow-automation hubspot/-cli-skills/workflow-automation List, inspect, create, update, and delete HubSpot workflows (v4 flows API) from the `hubspot` CLI, not the `hs`…

hubspot/-cli-skills

crm-builder customware-ai/skills/crm-builder Customer Relationship Management (CRM) vertical skill for the Customware SPA. Defines the section layout, entity view…

customware-ai/skills

depmap k-dense-ai/scientific--skills/depmap Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivi…

k-dense-ai/scientific--skills

phylogenetics k-dense-ai/scientific--skills/phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (…

k-dense-ai/scientific--skills

scvelo k-dense-ai/scientific--skills/scvelo RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajec…

k-dense-ai/scientific--skills

treatment-plans k-dense-ai/scientific--skills/treatment-plans Format and structurally validate local treatment-plan documentation after clinical decisions have already been suppli…

k-dense-ai/scientific--skills

diffdock k-dense-ai/scientific--skills/diffdock DiffDock and DiffDock-L molecular docking. Use for protein-small-molecule pose prediction from PDB or sequence plus S…

k-dense-ai/scientific--skills

medchem k-dense-ai/scientific--skills/medchem Medicinal chemistry filters for compound triage. Apply drug-likeness rules (Lipinski, Veber, CNS), structural alert c…

k-dense-ai/scientific--skills

geniml k-dense-ai/scientific--skills/geniml Use Geniml for audited local genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEm…

k-dense-ai/scientific--skills

unreal-engine-cpp-pro sickn33/ic-awesome-skills/unreal-engine-cpp-pro Expert guide for Unreal Engine 5.x C++ development, covering UObject hygiene, performance patterns, and best practice…

sickn33/ic-awesome-skills

pytdc k-dense-ai/scientific--skills/pytdc Use Therapeutics Data Commons through the PyTDC Python package for registry discovery, approved dataset access, task-…

k-dense-ai/scientific--skills

flowio k-dense-ai/scientific--skills/flowio Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO.

k-dense-ai/scientific--skills

gtars k-dense-ai/scientific--skills/gtars Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenizatio…

k-dense-ai/scientific--skills

molfeat k-dense-ai/scientific--skills/molfeat Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert S…

k-dense-ai/scientific--skills

pyopenms k-dense-ai/scientific--skills/pyopenms Complete mass spectrometry analysis platform.

k-dense-ai/scientific--skills

etetoolkit k-dense-ai/scientific--skills/etetoolkit Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4.

k-dense-ai/scientific--skills

histolab k-dense-ai/scientific--skills/histolab Lightweight WSI tile extraction and preprocessing.

k-dense-ai/scientific--skills

matchms k-dense-ai/scientific--skills/matchms Process, clean, compare, and search tandem mass spectra with matchms.

k-dense-ai/scientific--skills

usfiscaldata k-dense-ai/scientific--skills/usfiscaldata Query the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (…

k-dense-ai/scientific--skills

pennylane k-dense-ai/scientific--skills/pennylane Hardware-agnostic quantum ML framework with automatic differentiation.

k-dense-ai/scientific--skills

protocolsio-integration k-dense-ai/scientific--skills/protocolsio-integration Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing…

k-dense-ai/scientific--skills

tiledbvcf k-dense-ai/scientific--skills/tiledbvcf Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample …

k-dense-ai/scientific--skills

cirq k-dense-ai/scientific--skills/cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or…

k-dense-ai/scientific--skills

labarchive-integration k-dense-ai/scientific--skills/labarchive-integration Securely integrate with the official LabArchives ELN REST-like API and Inventory API v1. Use for regional endpoint se…

k-dense-ai/scientific--skills

opentrons-integration k-dense-ai/scientific--skills/opentrons-integration Author, review, migrate, simulate, and troubleshoot official Opentrons Python Protocol API v2 protocols for Flex and …

k-dense-ai/scientific--skills

rowan k-dense-ai/scientific--skills/rowan Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa a…

k-dense-ai/scientific--skills

cobrapy k-dense-ai/scientific--skills/cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

k-dense-ai/scientific--skills

qutip k-dense-ai/scientific--skills/qutip Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-st…

k-dense-ai/scientific--skills

architecture sickn33/ic-awesome-skills/architecture Architectural decision-making framework. Requirements analysis, trade-off evaluation, ADR documentation. Use when mak…

sickn33/ic-awesome-skills

cc-skill-frontend-patterns sickn33/ic-awesome-skills/cc-skill-frontend-patterns Frontend development patterns for React, Next.js, state management, performance optimization, and UI best practices.

sickn33/ic-awesome-skills

test-driven-development sickn33/ic-awesome-skills/test-driven-development Use a failing behavioral test to guide a feature or bug fix, then implement and refactor with relevant regression che…

sickn33/ic-awesome-skills

workflow-automation ruvnet/ruflo/workflow-automation Workflow creation, execution, and template management. Automates complex multi-step processes with coordination…

service-itsm-ic-setup-force-studio-configure forcedotcom/sf-skills/service-itsm-ic-setup-force-studio-configure Enable the force for IT Service Salesforce Go feature toggles (force Studio, Einstein Generative AI, the pa…

forcedotcom/sf-skills