Search

Find skills by name, source, slug, or description across the full catalog.

#

Skill

Source

Installs

adaptyv k-dense-ai/scientific--skills/adaptyv How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieva…

k-dense-ai/scientific--skills

ai-s-architect sickn33/ic-awesome-skills/ai-s-architect Expert in designing and building autonomous AI s. Masters tool use, memory systems, planning strategies, and mul…

sickn33/ic-awesome-skills

anndata k-dense-ai/scientific--skills/anndata Data structure for annotated matrices in single-cell analysis.

k-dense-ai/scientific--skills

arboreto k-dense-ai/scientific--skills/arboreto Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).

k-dense-ai/scientific--skills

astropy k-dense-ai/scientific--skills/astropy Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coor…

k-dense-ai/scientific--skills

atomic-decomposition lingzhi227/-research-skills/atomic-decomposition Decompose research ideas into atomic, self-contained concepts with bidirectional math-code mapping. For each concept,…

lingzhi227/-research-skills

benchling-integration k-dense-ai/scientific--skills/benchling-integration Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling App…

k-dense-ai/scientific--skills

bioservices k-dense-ai/scientific--skills/bioservices Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL,…

k-dense-ai/scientific--skills

cellxgene-census k-dense-ai/scientific--skills/cellxgene-census Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data.

k-dense-ai/scientific--skills

clinical-decision-support k-dense-ai/scientific--skills/clinical-decision-support Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarke…

k-dense-ai/scientific--skills

clinical-reports k-dense-ai/scientific--skills/clinical-reports Create safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safet…

k-dense-ai/scientific--skills

consciousness-council k-dense-ai/scientific--skills/consciousness-council Run a multi-perspective Mind Council deliberation on any question, decision, or creative challenge. Use this skill wh…

k-dense-ai/scientific--skills

context-compression sickn33/ic-awesome-skills/context-compression When sessions generate millions of tokens of conversation history, compression becomes mandatory. The naive app…

sickn33/ic-awesome-skills

crm-lookup hubspot/-cli-skills/crm-lookup Find a specific CRM record by ID, email, domain, or name fragment, and traverse associations for the full account pic…

hubspot/-cli-skills

datamol k-dense-ai/scientific--skills/datamol Pythonic wrapper around RDKit with simplified interface and sensible defaults.

k-dense-ai/scientific--skills

deepchem k-dense-ai/scientific--skills/deepchem Molecular ML with diverse featurizers and pre-built datasets.

k-dense-ai/scientific--skills

deeptools k-dense-ai/scientific--skills/deeptools NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), …

k-dense-ai/scientific--skills

dhdna-profiler k-dense-ai/scientific--skills/dhdna-profiler Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how…

k-dense-ai/scientific--skills

esm k-dense-ai/scientific--skills/esm Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFo…

k-dense-ai/scientific--skills

experiment-code lingzhi227/-research-skills/experiment-code Write ML experiment code with iterative improvement. Generate training/evaluation pipelines, debug errors, and optimi…

lingzhi227/-research-skills

feishu-binding starchild-ai-/official-skills/feishu-binding Feishu/Lark binding: device flow authorization, connect, disconnect, status check. Use when setting up or managing Fe…

starchild-ai-/official-skills

fluidsim k-dense-ai/scientific--skills/fluidsim Plan, configure, inspect, restart, and analyze bounded FluidSim computational-fluid-dynamics simulations with explici…

k-dense-ai/scientific--skills

geomaster k-dense-ai/scientific--skills/geomaster Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth obs…

k-dense-ai/scientific--skills

geopandas k-dense-ai/scientific--skills/geopandas Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial oper…

k-dense-ai/scientific--skills

gget k-dense-ai/scientific--skills/gget Fast CLI/Python queries to 20+ bioinformatics databases.

k-dense-ai/scientific--skills

hypogenic k-dense-ai/scientific--skills/hypogenic Plans and audits use of ChicagoHAI HypoGeniC/HypoRefine for LLM-assisted hypothesis generation from labeled text data…

k-dense-ai/scientific--skills

imaging-data-commons k-dense-ai/scientific--skills/imaging-data-commons Query and download public cancer imaging data from NCI Imaging Data Commons.

k-dense-ai/scientific--skills

implement boshu2/ops/implement Implement authorized work and repair understood defects; return derived subject identity and check facts. Triggers: "…

interactive-portfolio sickn33/ic-awesome-skills/interactive-portfolio Expert in building portfolios that actually land jobs and clients - not just showing work, but creating memorable exp…

sickn33/ic-awesome-skills

micro-saas-launcher sickn33/ic-awesome-skills/micro-saas-launcher Expert in launching small, focused SaaS products fast - the indie hacker approach to building profitable software. Co…

sickn33/ic-awesome-skills

modal k-dense-ai/scientific--skills/modal Modal is a serverless cloud platform for running Python on demand, including on-demand GPUs. Use when deploying or se…

k-dense-ai/scientific--skills

molecular-dynamics k-dense-ai/scientific--skills/molecular-dynamics Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis.

k-dense-ai/scientific--skills

monitoring-operations acedergren/oci--skills/monitoring-operations Use when setting up metrics, alarms, or troubleshooting missing data in OCI Monitoring. Covers metric namespace confu…

acedergren/oci--skills

neurokit2 k-dense-ai/scientific--skills/neurokit2 Use NeuroKit2 to build or audit reproducible research workflows for physiological time-series preprocessing, event/in…

k-dense-ai/scientific--skills

paper-assembly lingzhi227/-research-skills/paper-assembly Orchestrate the full paper pipeline end-to-end. Manage state propagation between phases (literature → plan → code → e…

lingzhi227/-research-skills

paper-compilation lingzhi227/-research-skills/paper-compilation Compile LaTeX papers to PDF with automatic error detection, chktex style checking, and citation/reference validation.…

lingzhi227/-research-skills

paper-to-code lingzhi227/-research-skills/paper-to-code Convert an ML research paper into a complete, runnable code repository. 3-stage pipeline from Paper2Code — Planning (…

lingzhi227/-research-skills

pathml k-dense-ai/scientific--skills/pathml Use PathML for local, research-only computational pathology workflows: load and tile slides, build preprocessing and …

k-dense-ai/scientific--skills

plan boshu2/ops/plan Shape or refine the existing bead or caller intent in place. Triggers: "plan", "discover and plan", "shape this goal"…

product boshu2/ops/product Create or refine PRODUCT.md while separating evidence, aspiration, users, value, and non-goals. Triggers: "product", …

pufferlib k-dense-ai/scientific--skills/pufferlib Version-aware guidance for PufferLib reinforcement-learning environments, vectorization, policies, PuffeRL training, …

k-dense-ai/scientific--skills

pydeseq2 k-dense-ai/scientific--skills/pydeseq2 Differential gene expression analysis for bulk RNA-seq with PyDESeq2, including formulaic designs, Wald tests, FDR co…

k-dense-ai/scientific--skills

pydicom k-dense-ai/scientific--skills/pydicom Use pydicom to read, inspect, write, transform, and safely preflight local DICOM datasets and pixel data. Applies to …

k-dense-ai/scientific--skills

pyhealth k-dense-ai/scientific--skills/pyhealth Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, …

k-dense-ai/scientific--skills

pymatgen k-dense-ai/scientific--skills/pymatgen Analyze, validate, convert, and transform materials structures and computed materials data with current pymatgen APIs…

k-dense-ai/scientific--skills

pymoo k-dense-ai/scientific--skills/pymoo Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZD…

k-dense-ai/scientific--skills

pysam k-dense-ai/scientific--skills/pysam Python/HTSlib workflows for genomic files. Use when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, F…

k-dense-ai/scientific--skills

rdkit k-dense-ai/scientific--skills/rdkit Cheminformatics toolkit for fine-grained molecular control.

k-dense-ai/scientific--skills

research-lookup k-dense-ai/scientific--skills/research-lookup Compile current scholarly evidence for a scientific manuscript or research brief. Use when the user explicitly asks t…

k-dense-ai/scientific--skills

rpi boshu2/ops/rpi Own an authorized outcome through implementation, checks and fresh final validation; load planning and memory only wh…