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Skill

Source

Installs

pydeseq2 k-dense-ai/scientific-agent-/pydeseq2 Differential gene expression analysis for bulk RNA-seq with PyDESeq2, including formulaic designs, Wald tests, FDR co…

k-dense-ai/scientific-agent-

rev-dex-dumper p4nda0s/reverse-/rev-dex-dumper Dump DEX files from a running Android app for unpacking/deobfuscation. Activate when the user wants to unpack an Andr…

p4nda0s/reverse-

imaging-data-commons k-dense-ai/scientific-agent-/imaging-data-commons Query and download public cancer imaging data from NCI Imaging Data Commons.

k-dense-ai/scientific-agent-

torchdrug k-dense-ai/scientific-agent-/torchdrug Build and troubleshoot TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraini…

k-dense-ai/scientific-agent-

deep-learning-pytorch mindrally//deep-learning-pytorch Expert guidance for deep learning, transformers, diffusion models, and LLM development with PyTorch, Transformers, Di…

n8n-agents czlonkowski/n8n-/n8n-agents Design n8n AI agents the right way. Use when building or editing any @n8n/n8n-nodes-langchain.* AI node — an AI Agent…

czlonkowski/n8n-

om-ux-setup open-mercato//om-ux-setup Extract the repository's design contract (tokens, component registry, screen archetypes, conventions) into .uxproof/ …

pymatgen k-dense-ai/scientific-agent-/pymatgen Analyze, validate, convert, and transform materials structures and computed materials data with current pymatgen APIs…

k-dense-ai/scientific-agent-

pyhealth k-dense-ai/scientific-agent-/pyhealth Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, …

k-dense-ai/scientific-agent-

esm k-dense-ai/scientific-agent-/esm Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFo…

k-dense-ai/scientific-agent-

zarr-python k-dense-ai/scientific-agent-/zarr-python Chunked N-D arrays for cloud storage (Zarr-Python 3). Compressed arrays, parallel I/O, S3/GCS via fsspec, NumPy/Dask/…

k-dense-ai/scientific-agent-

neurokit2 k-dense-ai/scientific-agent-/neurokit2 Use NeuroKit2 to build or audit reproducible research workflows for physiological time-series preprocessing, event/in…

k-dense-ai/scientific-agent-

scvi-tools k-dense-ai/scientific-agent-/scvi-tools Deep generative models for single-cell omics.

k-dense-ai/scientific-agent-

web-development tencentcloudbase//web-development Use when users need to implement, integrate, debug, build, deploy, or validate a Web frontend after the product direc…

tencentcloudbase/

dhdna-profiler k-dense-ai/scientific-agent-/dhdna-profiler Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how…

k-dense-ai/scientific-agent-

r3f-shaders enzed/r3f-/r3f-shaders Implement custom GLSL or TSL materials in React Three Fiber, including uniforms and vertex deformation. Use for shade…

ui-design starchild-ai-agent/official-/ui-design UI/UX quality gate and build guide for every visual output — landing pages, dashboards, web apps, portfolios, and too…

starchild-ai-agent/official-

frontend-design customware-ai//frontend-design Strict frontend design guardrails for building modern, minimal-visual-noise, airy, non-generic app UIs. Use whenever …

documentation mcollina//documentation Creates, structures, and reviews technical documentation following the Diátaxis framework (tutorials, how-to guides, …

humanizer-en-asd-ste100 samber/cc-/humanizer-en-asd-ste100 Write or rewrite English into ASD-STE100 Simplified Technical English and strip AI artifacts (decorative emojis, Mark…

cirq k-dense-ai/scientific-agent-/cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or…

k-dense-ai/scientific-agent-

diffdock k-dense-ai/scientific-agent-/diffdock DiffDock and DiffDock-L molecular docking. Use for protein-small-molecule pose prediction from PDB or sequence plus S…

k-dense-ai/scientific-agent-

pysam k-dense-ai/scientific-agent-/pysam Python/HTSlib workflows for genomic files. Use when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, F…

k-dense-ai/scientific-agent-

cobrapy k-dense-ai/scientific-agent-/cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

k-dense-ai/scientific-agent-

depmap k-dense-ai/scientific-agent-/depmap Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivi…

k-dense-ai/scientific-agent-

medchem k-dense-ai/scientific-agent-/medchem Medicinal chemistry filters for compound triage. Apply drug-likeness rules (Lipinski, Veber, CNS), structural alert c…

k-dense-ai/scientific-agent-

pathml k-dense-ai/scientific-agent-/pathml Use PathML for local, research-only computational pathology workflows: load and tile slides, build preprocessing and …

k-dense-ai/scientific-agent-

molfeat k-dense-ai/scientific-agent-/molfeat Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert S…

k-dense-ai/scientific-agent-

treatment-plans k-dense-ai/scientific-agent-/treatment-plans Format and structurally validate local treatment-plan documentation after clinical decisions have already been suppli…

k-dense-ai/scientific-agent-

whose-number-is-this useosint//whose-number-is-this >- Investigate a phone number — E.164 normalisation with libphonenumber, phoneinfoga scanning, carrier and line-type …

geniml k-dense-ai/scientific-agent-/geniml Use Geniml for audited local genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEm…

k-dense-ai/scientific-agent-

labarchive-integration k-dense-ai/scientific-agent-/labarchive-integration Securely integrate with the official LabArchives ELN REST-like API and Inventory API v1. Use for regional endpoint se…

k-dense-ai/scientific-agent-

pennylane k-dense-ai/scientific-agent-/pennylane Hardware-agnostic quantum ML framework with automatic differentiation.

k-dense-ai/scientific-agent-

etetoolkit k-dense-ai/scientific-agent-/etetoolkit Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4.

k-dense-ai/scientific-agent-

flowio k-dense-ai/scientific-agent-/flowio Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO.

k-dense-ai/scientific-agent-

pytdc k-dense-ai/scientific-agent-/pytdc Use Therapeutics Data Commons through the PyTDC Python package for registry discovery, approved dataset access, task-…

k-dense-ai/scientific-agent-

secrets-in-file-metadata useosint//secrets-in-file-metadata >- Extract and interpret embedded file metadata with exiftool — EXIF GPS coordinates, camera make, model and serial, …

video-analysis starchild-ai-agent/official-/video-analysis Video understanding for any model \u2014 native passthrough for small\ \ files,\nframe extraction + audio transcripti…

starchild-ai-agent/official-

phylogenetics k-dense-ai/scientific-agent-/phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (…

k-dense-ai/scientific-agent-

scvelo k-dense-ai/scientific-agent-/scvelo RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajec…

k-dense-ai/scientific-agent-

om-ux-shape open-mercato//om-ux-shape Turn a vague product, UI/UX, or AI feature idea into a decided direction. Use when shaping a feature, simplifying an …

protocolsio-integration k-dense-ai/scientific-agent-/protocolsio-integration Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing…

k-dense-ai/scientific-agent-

usfiscaldata k-dense-ai/scientific-agent-/usfiscaldata Query the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (…

k-dense-ai/scientific-agent-

matchms k-dense-ai/scientific-agent-/matchms Process, clean, compare, and search tandem mass spectra with matchms.

k-dense-ai/scientific-agent-

bright-data-best-practices brightdata//bright-data-best-practices Build production-ready Bright Data integrations with best practices baked in.

graphic-designer charlie947/social-media-/graphic-designer Create LinkedIn post graphics. Decides between an HTML/CSS structured graphic or an AI-generated infographic based on…

charlie947/social-media-

gtars k-dense-ai/scientific-agent-/gtars Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenizatio…

k-dense-ai/scientific-agent-

histolab k-dense-ai/scientific-agent-/histolab Lightweight WSI tile extraction and preprocessing.

k-dense-ai/scientific-agent-

lamindb k-dense-ai/scientific-agent-/lamindb Use when working with LaminDB, the open-source lineage-native lakehouse for biological datasets and models.

k-dense-ai/scientific-agent-

n8n-self-hosting czlonkowski/n8n-/n8n-self-hosting Deploy a production self-hosted n8n end-to-end to a fresh Linux VM over SSH, using Docker Compose behind a Caddy reve…

czlonkowski/n8n-