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Skill

Source

Installs

bio-metagenomics-strain-tracking smithery/gptomics/bio-metagenomics-strain-tracking Resolves and compares bacterial strains below the species level from shotgun metagenomes inStrain (popANI/conANI…

smithery/gptomics

bio-microbiome-differential-abundance smithery/gptomics/bio-microbiome-differential-abundance Tests which individual taxa differ between groups on an amplicon ASV/feature table (phyloseq) using compositionally-a…

smithery/gptomics

bio-phasing-imputation-haplotype-phasing smithery/gptomics/bio-phasing-imputation-haplotype-phasing Estimates haplotype phase from population linkage disequilibrium SHAPEIT5, SHAPEIT4, Eagle2, or Beagle - turning…

smithery/gptomics

bio-phylo-tree-io smithery/gptomics/bio-phylo-tree-io Read, write, and convert phylogenetic tree files Biopython Bio.Phylo, and choose an annotation-preserving parser…

smithery/gptomics

bio-reporting-figure-export smithery/gptomics/bio-reporting-figure-export Exports publication-ready figures the correct vector/raster split, embedded editable fonts, color-space-robust p…

smithery/gptomics

bio-rna-quantification-alignment-free-quant smithery/gptomics/bio-rna-quantification-alignment-free-quant Quantify transcript expression from FASTQ Salmon (selective alignment) or kallisto (pseudoalignment), bypassing …

smithery/gptomics

bio-rna-quantification-tximport-workflow smithery/gptomics/bio-rna-quantification-tximport-workflow Import transcript-level quantifications from Salmon/kallisto/RSEM into R for gene-level analysis DESeq2/edgeR us…

smithery/gptomics

bio-single-cell-perturb-seq smithery/gptomics/bio-single-cell-perturb-seq Analyze Perturb-seq / CROP-seq single-cell CRISPR screens.

smithery/gptomics

bio-small-rna-seq-differential-mirna smithery/gptomics/bio-small-rna-seq-differential-mirna Tests miRNAs for differential expression DESeq2 or edgeR using small-RNA-aware normalization and filtering.

smithery/gptomics

bio-structural-biology-structure-modification smithery/gptomics/bio-pdb-structure-modification Modifies protein structures in place Biopython Bio.PDB - transforms coordinates, strips waters/heteroatoms, over…

smithery/gptomics

bio-tcr-bcr-analysis-scirpy-analysis smithery/gptomics/bio-tcr-bcr-analysis-scirpy-analysis Integrates single-cell paired TCR/BCR (10x VDJ, AIRR, dandelion, BD Rhapsody) gene expression in an AnnData/MuDa…

smithery/gptomics

bio-workflows-fastq-to-variants smithery/gptomics/bio-workflows-fastq-to-variants Orchestrates the end-to-end germline short-variant pipeline from FASTQ to a filtered, normalized, benchmarked VCF, ch…

smithery/gptomics

bir-tax-filing smithery/jgtolentino/bir-tax-filing Automate Philippine BIR (Bureau of Internal Revenue) tax form generation and filing. Handles 1601-C (holding tax)…

smithery/jgtolentino

bird-cli smithery/antoniolg/bird-cli Read-only usage of the bird CLI for X/Twitter accounts (timelines, mentions, and analysis). Trigger when asked to ins…

smithery/antoniolg

board-prep smithery/agent-skills/board-prep Board meeting preparation for the adversarial scenario, not the friendly one.

smithery/agent-skills

bonfire smithery/vieko/bonfire Session context persistence for AI coding via a `.bonfire/index.md` file convention. This skill is the cross-agent fa…

brand-voice-editor smithery/jlov7/brand-voice-editor Edits copy to match the included brand voice guide. Use for rewriting short passages in a confident, plain-spoken reg…

breadcrumbs smithery/elliotjlt/breadcrumbs Leaves notes for future Claude sessions in .claude/breadcrumbs.md. At session end or after significant work, records …

smithery/elliotjlt

Browser Daemon smithery/jackspace/browser-daemon Persistent browser automation via Playwright daemon.

smithery/jackspace

Browser Tab Management smithery/chickenloop3845-commits/browser-tab-management Enforce the Fixed 4-Tab Browser Model - maintain exactly 4 tabs, navigate in them, never open/close.

smithery/chickenloop3845-commits

build smithery/ashneyderman/build Implement a task directly out creating a plan first

smithery/ashneyderman

building-chat-interfaces smithery/mjunaidca/building-chat-interfaces Build AI chat interfaces custom backends, authentication, and context injection. Use when integrating chat UI wi…

smithery/mjunaidca

building-chat-widgets smithery/mjunaidca/building-chat-widgets Build interactive AI chat widgets buttons, forms, and bidirectional actions. Use when creating agentic UIs …

smithery/mjunaidca

bun-react-ssr smithery/secondsky/bun-react-ssr Use when building server-rendered React Bun, including streaming SSR, hydration, renderToString, or custom SSR w…

smithery/secondsky

bundle-size smithery/nikhillinit/bundle-size Bundle size analysis, budget enforcement, and regression detection for Vite/Rollup builds. This skill should be used …

smithery/nikhillinit

caam smithery/dicklesworthstone/caam >- Manage AI coding CLI accounts sub-100ms switching. Use when hitting rate limits on Claude Max, GPT Pro, or Ge…

smithery/dicklesworthstone

capacitor-offline-first smithery/cap-go/capacitor-offline-first Guide to building offline-first Capacitor apps data synchronization, caching strategies, and conflict resolution…

smithery/cap-go

careful-delete smithery/elliotjlt/careful-delete Before any destructive or irreversible operation (rm -rf, DROP TABLE, DELETE, force push, branch deletion, truncate),…

smithery/elliotjlt

challenge-that smithery/NTCoding/challenge-that Force critical evaluation of proposals, requirements, or decisions by analyzing from multiple adversarial perspective…

smithery/NTCoding

chapter-briefs smithery/willoscar/chapter-briefs Build per-chapter (H2) writing briefs (NO PROSE) so the final survey reads like a paper (chapter leads + cross-H3 coh…

smithery/willoscar

chapter-lead-writer smithery/willoscar/chapter-lead-writer Write H2 chapter lead blocks (`sections/S<sec_id>_lead.md`) that preview the chapter's comparison lens and connect it…

smithery/willoscar

chat-card-skill smithery/tlofreso/chat-card-skill Generate inline chat cards using DaisyUI components for user interactions.

smithery/tlofreso

chezmoi-development smithery/fx/chezmoi-development This skill should be used when developing or modifying dotfiles using chezmoi.

chinese-style-guide smithery/rightcapitalhq/chinese-style-guide This skill should be used when the user asks to "写文档", "撰写文章", "写邮件", "编辑中文", "检查格式", "修正排版", "…

smithery/rightcapitalhq

chipsec smithery/BrownFineSecurity/chipsec Static analysis of UEFI/BIOS firmware dumps using Intel's chipsec framework.

smithery/BrownFineSecurity

christianity-aramaic-wisdom smithery/microck/christianity-aramaic-wisdom Christian mystical wisdom through Aramaic lens - Kingdom in, Christ consciousness, feminine divine, embodiment na…

smithery/microck

citation-injector smithery/willoscar/citation-injector APPLIES/consumes a `citation-diversifier` budget report (`output/CITATION_BUDGET_REPORT.md`) to inject *in-scope* cit…

smithery/willoscar

claude-codex-collaboration site/modelscope.cn/majiayu000__claude-codex-collaboration Enable automated collaboration between Claude Code and Codex CLI using Byterover as shared memory.

claude-skill smithery/myysophia/claude-skill Use when user asks to leverage claude or claude code to do something (e.g. implement a feature design or review codes…

smithery/myysophia

Claudeisms Operational Guidelines smithery/microck/claudeisms-operational-guidelines Apply strict operational protocols for AI task execution including sequential processing, minimal responses, no destr…

smithery/microck

claudisms smithery/microck/claudisms Claude Code plugin enforcing operational guidelines, terse responses, sequential execution, and no destructive operat…

smithery/microck

clay-rate-limits smithery/jeremylongshore/clay-rate-limits Handle Clay rate limits, webhook throttling, and credit pacing strategies. Use when hitting 429 errors, managing webh…

smithery/jeremylongshore

cliffhanger-craft smithery/omer-metin/cliffhanger-craft Expert in creating endings that demand continuation.

smithery/omer-metin

clink-standalone smithery/VCnoC/clink-standalone Standalone CLI bridge - launch external AI CLIs (gemini, codex, claude) directly out MCP server. Use when you nee…

clip smithery/davila7/clip OpenAI's model connecting vision and language.

smithery/davila7

cloud-quality-gate smithery/tanujsutaria/cloud-quality-gate Validate code quality out requiring builds. Use in cloud sessions to catch issues before they reach CI. Checks sy…

smithery/tanujsutaria

code-analyzer smithery/rafaelcalleja/code-analyzer This skill should be used when the user asks to "analyze code", "review code quality", "check code structure", "find …

smithery/rafaelcalleja

code-walk-thru smithery/pchalasani/code-walk-thru Use this when user wants you to walk through (code or text) files in a EDITOR to either explain how some code works, …

smithery/pchalasani

codebase-snapshot smithery/spascual/codebase-snapshot Documents codebase structure and implementation out evaluation or recommendations.

smithery/spascual

collab-deliberation smithery/kbediako/collab-deliberation Structure multi-agent brainstorming and deliberation (options, tradeoffs, decision framing) out drifting into imp…

smithery/kbediako