SkillsAdd

promptingcompany/nv-skills

dicom-series-preflight

Used for header-only preflight of one DICOM series folder before conversion or inference. Not for de-identification or clinical clearance.

First seen Jun 12, 2026

Installation

$ npx skills add promptingcompany/nv-skills --skill dicom-series-preflight
View on skills.sh ↗ GitHub repository ↗

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More details

Agent compatibility

Declared targets from SKILL.md / docs. Unmarked agents are not listed — the skill may still install via the CLI.

Claude Code Not declared
Cursor Not declared
Codex Not declared
GitHub Copilot Not declared
Windsurf Not declared
Gemini CLI Not declared
Cline Not declared
OpenCode Not declared

Also listed on

Alternate registries and mirrors of this skill.

Repository health

License LICENSE
Default branch main
Status Active

Skill metadata

Parsed from SKILL.md frontmatter.

LicenseApache-2.0
Allowed toolsBash
More metadata
author
NVIDIA MedTech Team
tags
["MedTech","DICOM","preflight"]

Package contents

Files included with this skill beyond the listing page.

  • skill md SKILL.md 3,343 B
  • docs SUMMARY.md 168 B

History

  1. First seen on skills.sh
  2. First recorded snapshot · 39 installs

SKILL.md

DICOM Series Preflight

Purpose

  • Used for header-only preflight of one DICOM series folder before conversion or inference. Not for de-identification or clinical clearance.
  • Use the wrapper exactly as documented; do not replace the upstream entrypoint with a handwritten implementation.
  • Manifest I/O: inputs are dicomdir; outputs are preflightjson.

Instructions

  • Read skill_manifest.yaml before changing arguments, side effects, or validation gates.
  • Run scripts/preflight_series.py through the documented command below; keep outputs under a caller-provided run directory.
  • If a host agent exposes runscript, use runscript("scripts/preflight_series.py", args=[...]); otherwise run the Bash/Python command shown below.
  • Check the emitted JSON and paired verifier guidance before treating the run as evidence.

Available Scripts

Script Purpose Arguments
scripts/preflight_series.py Primary entrypoint declared by skill_manifest.yaml. PATHTODICOM_DIR

Prerequisites

  • Runtime requirements: Python packages listed in runtime.sideeffects.pippackages.
  • Run commands from the repository root unless an existing section below says otherwise.

Limitations

  • Header-only; does not decode pixel data or detect burnt-in PHI.
  • Canonical orientation gate assumes LPS-derived CT axcodes L,P,S.
  • Compressed transfer syntax and multi-frame instances are warned, not decoded.
  • Single-directory scan; does not reconcile multiple studies in one tree.
  • Not for clinical deployment, regulatory de-identification, autonomous diagnosis, production ingestion without a vetted converter.

Troubleshooting

Error Cause Fix
Missing dependency or import error Runtime package drift from skill_manifest.yaml. Install the packages declared in the manifest or use the documented setup command.
Empty or schema-invalid output Wrong input path, unsupported modality, or upstream failure. Re-run with a known fixture and inspect the wrapper JSON plus stderr.
Validation gate failure Output violated a declared engineering invariant. Keep the failed evidence pack and use the gate message to repair inputs or wrapper code.

Scans a DICOM directory (one series per folder) without decoding pixels. Emits JSON with inventory, orientation axcodes, PHI flags, findings, and a preflight.verdict of pass, warn, or fail.

python scripts/preflight_series.py PATH_TO_DICOM_DIR

Pair with verifiers/dicompreflightquality_v1 for a trusted preflight pack:

make run-trusted SKILL=dicom_series_preflight \
  FIXTURE=skills/dicom-series-preflight/fixtures/clean_no_phi \
  OUT=runs/dicom_preflight_demo

Flagship workflow:

make run-workflow \
  WORKFLOW=examples/workflows/dicom_preflight_gate.yaml \
  WORKFLOW_INPUT=skills/dicom-series-preflight/fixtures/clean_no_phi \
  WORKFLOW_OUT=runs/dicom_preflight_gate

Not for de-identification, private-tag review, or clinical clearance.