Building Fine-Tuning Datasets

A fine-tune is its dataset. Hyperparameters decide whether training converges; the dataset decides what the model becomes. Most disappointing fine-tunes are correctly-configured runs over data that encoded the wrong thing.

Two failures cause most of the damage, and both are settled before a single example is generated: teaching facts that belong in retrieval, and having no way to detect that the model got worse at everything else.

Gate 1: Is this a knowledge problem?

If the goal contains "so it knows our X" — product names, runbook facts, current inventory, policy details — that part is a retrieval problem, and fine-tuning is the wrong tool for it.

Models acquire facts in pretraining; fine-tuning teaches them to use what they have. Examples carrying genuinely new facts are learned much more slowly than ones consistent with existing knowledge, and as they finally are learned they linearly increase the model's tendency to hallucinate (Gekhman et al., EMNLP 2024, measured on closed-book QA). The rate is measured over the whole evaluation, not just the newly taught items — so the cost lands on factuality generally, and it grows the longer you train to make the new facts stick.

Split the request explicitly before proceeding:

Say which parts you routed where. A user asking for one thing usually wants both halves solved, not the retrieval half silently folded into the training set.

Gate 2: Which technique

Stage and parameter budget are independent choices. Read references/choosing-technique.md before committing — it covers prompt/RAG/decoding alternatives, continued pretraining vs SFT vs preference optimization vs RL, DPO/KTO/ORPO/SimPO selection, full FT vs LoRA vs QLoRA, and required stage ordering.

Short version: if you can write the correct output, SFT. If you can only say which of two outputs is better, preference optimization. If a script can verify correctness and SFT has plateaued, RL. Default parameter budget is LoRA, or QLoRA when VRAM-bound.

Gate 3: Does the base model already do it?

Before generating data for any capability or behavior, probe the base model on it — a couple dozen samples across the cases you care about — and only keep the slices it measurably fails. This is Gate 1's knowledge rule generalized: fine-tuning is for what the model gets wrong, and training a slice it already handles is not neutral.

The two costs are real and documented:

• Wasted effort. A team building a behavior dataset probed their base model and found it already

passed one entire behavior at ~94% with no reproducible failure pattern — they dropped 150 rows that would have taught nothing.

• Active regression. The same narrow behavioral fine-tune, ~750 rows, caused a measurable

general-capability regression on four reasoning benchmarks (grade-school math down ~10–16pp) that nobody saw until the benchmark panel ran, because the run had no eval split. Every row you add can cost capability elsewhere; rows that teach nothing pay that cost for no gain.

So the probe is not optional diligence — it decides what goes in the dataset. Keep the confirmed-failing cases, resample the ambiguous ones (a 1-of-3 refusal is sampling noise, not a failure — single-shot refusal evaluation is only ~92% accurate, Larsen et al. 2025), and drop what the base model already does. Report confirmed categories as a rate ("2/3", "3/3"), not a binary: a 2/3 confirmation is a watch-item, not a solved one, since under pure noise it still confirms ~26% of the time, and it is exactly the category to re-probe after the next training run.

The deliverable

A fine-tuning dataset is not a file of examples. It ships as eight parts, and a handoff missing any of them cannot be evaluated or reproduced. Deliver them in this order — the order is the method:

1. eval/ — the held-out suite, built first. Real examples only, reserved before generation. Three

subsets: task (held-out real examples of the target behavior), retention (general-capability probes the base model already passes), behavior (refusals, safety, tone invariants to preserve).

1. baseline.json — the base model scored on all three subsets before any training. Without this

there is no denominator and "it looks good" is not a result.

1. taxonomy.md — the axes the data must cover, with a target count per cell. Diversity comes from

varying what you condition on, so the axes have to exist on paper before generation and be re-counted after filtering. Empty cells are the next generation round's target, not an acceptable outcome.

1. train.jsonl / val.jsonl / test.jsonl in messages format, split by source document so

synthetic siblings never straddle the boundary, deduplicated at all three levels (exact, near-duplicate, semantic), and decontaminated against every eval set you intend to report.

1. The replay mix — task data blended with general instruction data at a stated ratio, so the model

does not lose what it already had.

1. A verified format contract — which loss-masking flag matches your dataset format

(assistantonlyloss for messages, completiononlyloss for prompt/completion), which EOS token the chat template actually emits, and confirmation of both by decoding one training batch. A wrong flag trains on the user's turns and a wrong EOS produces a model that never stops; neither shows up as a bad loss curve, which is why this is a checked artifact rather than a habit.

1. card.md — provenance. Seed source, generator model and version, generation prompts, filters and

thresholds, dedup and decontamination method, counts per taxonomy cell, license and terms.

1. config.yaml — the training config, with the eval curve enabled so overfitting is visible while

it happens.

Building the eval set first is what stops the dataset from being optimized toward whatever the generator happened to produce.

Write every prose artifact skeleton-first, one section per edit. A single tool call cannot emit more than roughly a thousand tokens, and the plan, taxonomy, and card all run longer, so a one-shot write truncates mid-string and the call fails. Write the file with its headings and a one-line stub under each, then replace one stub per edit. Start this way rather than falling back to it — the skeleton costs nothing and the sections land in the same number of edits either way.

Generate with a script, not by hand

You write the pipeline; the pipeline writes the data. Emitting training examples yourself, one at a time into a JSONL file, is the wrong shape for this work no matter how few examples you need:

• It does not scale. Three hundred examples at ~800 tokens each is far past what any agent can emit,

and you will produce a truncated file while believing you produced a dataset.

• It is not reproducible. A dataset you cannot regenerate is one you cannot fix. A script plus a

seed, a pinned generator model, and a versioned prompt can be re-run when you find a defect.

• The generation loop is genuinely a loop. Generate into taxonomy cells → verify → filter → dedup →

re-count coverage → generate into the cells that came up short. That cycle runs several times and cannot be done by hand.

• Filtering needs code anyway. MinHash near-duplicate detection, embedding nearest-neighbor

thresholds, and n-gram decontamination are not eyeball operations.

So the artifacts you hand-author are the inputs: the taxonomy, the generation prompts, the seed examples, the filter thresholds. Everything downstream is produced by running something.

scripts/generate.py and scripts/curate.py in this skill are a working reference pipeline — taxonomy-driven generation with resume, then dedup, decontamination, and a coverage report. Read them, adapt the prompts and taxonomy to the task, and run them; they are a starting point, not a framework. Prefer extending them over writing a pipeline from scratch.

Order of work

digraph finetune_data {
    rankdir=TB;
    "Split knowledge from behavior" [shape=box];
    "Behavior part non-empty?" [shape=diamond];
    "Route to RAG; stop" [shape=doublecircle];
    "Choose stage + parameter budget" [shape=box];
    "Write eval suite from real data" [shape=box];
    "Score base model -> baseline.json" [shape=box];
    "Define taxonomy of axes to cover" [shape=box];
    "Generate wide" [shape=box];
    "Verify, filter, dedup, decontaminate" [shape=box];
    "Coverage gaps remain?" [shape=diamond];
    "Blend replay data" [shape=box];
    "Train with eval curve" [shape=box];
    "Gates pass vs baseline?" [shape=diamond];
    "Ship with card.md" [shape=doublecircle];
    "Diagnose: data or config?" [shape=box];

    "Split knowledge from behavior" -> "Behavior part non-empty?";
    "Behavior part non-empty?" -> "Route to RAG; stop" [label="no"];
    "Behavior part non-empty?" -> "Choose stage + parameter budget" [label="yes"];
    "Choose stage + parameter budget" -> "Write eval suite from real data";
    "Write eval suite from real data" -> "Score base model -> baseline.json";
    "Score base model -> baseline.json" -> "Define taxonomy of axes to cover";
    "Define taxonomy of axes to cover" -> "Generate wide";
    "Generate wide" -> "Verify, filter, dedup, decontaminate";
    "Verify, filter, dedup, decontaminate" -> "Coverage gaps remain?";
    "Coverage gaps remain?" -> "Generate wide" [label="yes, target the empty cells"];
    "Coverage gaps remain?" -> "Blend replay data" [label="no"];
    "Blend replay data" -> "Train with eval curve";
    "Train with eval curve" -> "Gates pass vs baseline?";
    "Gates pass vs baseline?" -> "Ship with card.md" [label="yes"];
    "Gates pass vs baseline?" -> "Diagnose: data or config?" [label="no"];
    "Diagnose: data or config?" -> "Generate wide";
}

The loop back from coverage gaps is the step most pipelines skip. Generation is cheap and filtering is destructive, so generate wide and filter down — then look at which taxonomy cells came out empty and generate specifically into those, rather than running the same unconditioned loop again and getting the same modes back.

Quality over quantity, with numbers

Within a fixed budget, curated hundreds beat unfiltered tens of thousands for general instruction and style — the consistent result across LIMA (1,000 curated competitive against 50k), AlpaGasus, and LIMO (817 reasoning traces). That is what those papers measured, and it does not transfer to overriding a base prior (a safety refusal, a strong default): there the behavior needs both a minimum count and a minimum share of the mix, and a small set of rephrased variants of a handful of scenarios is the least-favorable regime for "less is more." Judge which regime you are in before reaching for the quality-over-quantity conclusion. Typical ranges:

When a run underperforms, doubling the data is usually the wrong reflex — and specifically wrong when the extra rows are rephrasings of scenarios you already have: at a fixed update budget, repeating a small set causes the same world-knowledge forgetting as scaling, and a narrow, repetitive dataset is the mode-collapse setup. The data move that does help retention is adding new general replay, not more of the target behavior. Check in this order: LR (retention-side, first), then target modules, then diversity, then mix.

Degradation gates

Run these against baseline.json before calling a fine-tune successful. Each maps to a documented failure mode, and passing the task metric while failing these is the most common way a bad model ships.

Measuring only the task metric is how a model that got 10 points better at one thing and 15 worse at everything else gets shipped.

References and scripts

Read the reference you need; do not load all five.

The scripts/ are a runnable reference pipeline — adapt, don't rewrite:

Common mistakes