npx skills add smithery/Starlitnightly --skill tcga-bulk-data-preprocessing-with-omicverse
omicverse/omicverse-skills · Archived
tcga-bulk-data-preprocessing-with-omicverse
TCGA bulk RNA-seq preprocessing with pyTCGA: GDC sample sheets, expression archives, clinical metadata, Kaplan-Meier survival analysis, and annotated AnnData…
Installation
$
npx skills add https://github.com/omicverse/omicverse-skills
Stronger alternatives
This repository is archived — consider an actively maintained alternative.
omicverse-single-cell-clustering-backends
Same source · more installs
omicverse/omicverse-skills
Run and compare OmicVerse single-cell clustering backends as a reusable, triggerable skill. Use…
4 installs
omicverse-single-cell-cellphonedb-communication
Same source · more installs
omicverse/omicverse-skills
Analyze single-cell cell-cell communication with OmicVerse CellPhoneDB and CellChat-style visua…
3 installs
omicverse-single-cell-batch-integration
Same source · more installs
omicverse/omicverse-skills
Run OmicVerse single-cell batch integration as a reusable, triggerable skill after preprocessin…
2 installs
omicverse-single-cell-preprocessing
Same source · more installs
omicverse/omicverse-skills
Convert OmicVerse single-cell preprocessing and marker-discovery notebooks into a reusable, tri…
2 installsAlso in this package
Other skills from omicverse/omicverse-skills · top by installs.
npx skills add https://github.com/omicverse/omicverse-skills
omicverse-single-cell-clustering-backends
4
omicverse-single-cell-cellphonedb-communication
3
omicverse-single-cell-batch-integration
2
omicverse-single-cell-preprocessing
2
omicverse-single-cell-foundation-model
2
omicverse-single-cell-cytotrace2
2
omicverse-single-cell-scenic
2
omicverse-single-cell-annotation
2
omicverse-single-cell-sctour-trajectory
2
omicverse-single-cell-trajectory-inference
2
More details
Agent compatibility
Declared targets from SKILL.md / docs. Unmarked agents are not listed — the skill may still install via the CLI.
Claude Code
Not declared
Cursor
Not declared
Codex
Not declared
GitHub Copilot
Not declared
Windsurf
Not declared
Gemini CLI
Not declared
Cline
Not declared
OpenCode
Not declared
Also listed on
Alternate registries and mirrors of this skill.
Repository health
Stars
13
License
LICENSE
Default branch
main
Open issues
1
Status
Archived
History
- First seen on skills.sh
- First recorded snapshot · 1 installs