leonchaox/qinyan-academic-skills

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edgartools Python library for accessing, analyzing, and extracting data from SEC EDGAR filings. Use when working with SEC filing…

leonchaox/qinyan-academic-skills

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2

fda-database Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identifi…

leonchaox/qinyan-academic-skills

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3

flowio Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert t…

leonchaox/qinyan-academic-skills

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4

fred-economic-data Query FRED (Federal Reserve Economic Data) API for 800,000+ economic time series from 100+ sources. Access GDP, unemp…

leonchaox/qinyan-academic-skills

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5

generate-image Generate or edit images using AI models (FLUX, Nano Banana 2). Use for general-purpose image generation including pho…

leonchaox/qinyan-academic-skills

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geo-database Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), r…

leonchaox/qinyan-academic-skills

62

7

geomaster Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth obs…

leonchaox/qinyan-academic-skills

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8

gtex-database Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative tr…

leonchaox/qinyan-academic-skills

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hedgefundmonitor Query the OFR (Office of Financial Research) Hedge Fund Monitor API for hedge fund data including SEC Form PF aggrega…

leonchaox/qinyan-academic-skills

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10

histolab Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, …

leonchaox/qinyan-academic-skills

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hypothesis-generation Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to …

leonchaox/qinyan-academic-skills

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imaging-data-commons Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-…

leonchaox/qinyan-academic-skills

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13

infographics Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for qual…

leonchaox/qinyan-academic-skills

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14

latex-posters Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference pre…

leonchaox/qinyan-academic-skills

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15

markdown-mermaid-writing Comprehensive markdown and Mermaid diagram writing skill. Use when creating any scientific document, report, analysis…

leonchaox/qinyan-academic-skills

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16

market-research-reports Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartn…

leonchaox/qinyan-academic-skills

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markitdown Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transc…

leonchaox/qinyan-academic-skills

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18

matplotlib Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, cr…

leonchaox/qinyan-academic-skills

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19

molfeat Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert S…

leonchaox/qinyan-academic-skills

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20

networkx Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when workin…

leonchaox/qinyan-academic-skills

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21

neurokit2 Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, a…

leonchaox/qinyan-academic-skills

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22

neuropixels-analysis Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike s…

leonchaox/qinyan-academic-skills

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23

omero-integration Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotat…

leonchaox/qinyan-academic-skills

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24

open-notebook Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when org…

leonchaox/qinyan-academic-skills

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25

opentrons-integration Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardw…

leonchaox/qinyan-academic-skills

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parallel-web Search the web, extract URL content, and run deep research using the Parallel Chat API and Extract API. Use for ALL w…

leonchaox/qinyan-academic-skills

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perplexity-search Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This s…

leonchaox/qinyan-academic-skills

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pubmed-database Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation manageme…

leonchaox/qinyan-academic-skills

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pufferlib High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel trai…

leonchaox/qinyan-academic-skills

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pyhealth Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data…

leonchaox/qinyan-academic-skills

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31

pymatgen Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project i…

leonchaox/qinyan-academic-skills

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32

qutip Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, d…

leonchaox/qinyan-academic-skills

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scientific-brainstorming Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary co…

leonchaox/qinyan-academic-skills

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scientific-critical-thinking Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases a…

leonchaox/qinyan-academic-skills

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35

torchdrug PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug …

leonchaox/qinyan-academic-skills

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transformers This skill should be used when working with pre-trained transformer models for natural language processing, computer …

leonchaox/qinyan-academic-skills

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umap-learn UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HD…

leonchaox/qinyan-academic-skills

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38

uniprot-database Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workf…

leonchaox/qinyan-academic-skills

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39

what-if-oracle Run structured What-If scenario analysis with multi-branch possibility exploration. Use this skill when the user asks…

leonchaox/qinyan-academic-skills

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40

adaptyv Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing exper…

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aeon This skill should be used for time series machine learning tasks including classification, regression, clustering, fo…

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42

alphafold-database Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, …

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43

anndata Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with …

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astropy Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical…

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benchling-integration Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build…

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bindingdb-database Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), comp…

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biopython Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogeneti…

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48

brenda-database Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data…

leonchaox/qinyan-academic-skills

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cellxgene-census Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases,…

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chembl-database Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactiv…

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