jackspace/claudeskillz

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zinc-database Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for doc…

jackspace/claudeskillz

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anndata This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics …

jackspace/claudeskillz

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arboreto Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use wh…

jackspace/claudeskillz

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benchling-integration Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build…

jackspace/claudeskillz

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clinicaltrials-database Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial det…

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clinvar-database Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classification…

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defense-in-depth Use when invalid data causes failures deep in execution, requiring validation at multiple system layers - validates a…

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esm Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequenc…

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Fluxwing Screenshot Importer Import UI screenshots and generate uxscii components automatically using vision analysis. Use when user wants to impo…

jackspace/claudeskillz

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gtars High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic re…

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gwas-database Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-va…

jackspace/claudeskillz

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hypogenic Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hy…

jackspace/claudeskillz

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labarchive-integration Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate wi…

jackspace/claudeskillz

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lamindb This skill should be used when working with LaminDB, an open-source data framework for biology that makes data querya…

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medchem Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexit…

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opentargets-database Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetic…

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opentrons-integration Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (hea…

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pufferlib This skill should be used when working with reinforcement learning tasks including high-performance RL training, cust…

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pydeseq2 Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR co…

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sharing-skills Use when you've developed a broadly useful skill and want to contribute it upstream via pull request - guides process…

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torch-geometric Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, m…

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vaex Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex…

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alphafold-database Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files…

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chembl-database Query ChEMBL's bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioact…

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cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

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deeptools NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), …

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ensembl-database Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparat…

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Fluxwing Component Creator Create uxscii components with ASCII art and structured metadata when user wants to create, build, or design UI compon…

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Fluxwing Component Expander Add interaction states like hover, focus, disabled, active, error to existing uxscii components. Use when working wit…

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Fluxwing Component Viewer View detailed information about a specific uxscii component including metadata, states, props, and ASCII preview. Use…

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Fluxwing Library Browser Browse and view all available uxscii components including bundled templates, user components, and screens. Use when w…

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Fluxwing Screen Scaffolder Build complete UI screens by composing multiple uxscii components. Use when working with .uxm files, when user wants …

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gene-database Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenot…

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geniml This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for tra…

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histolab Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathol…

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latchbio-integration Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serve…

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mcp-builder Guide for creating high-quality MCP (Model Context Protocol) servers that enable LLMs to interact with external servi…

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omero-integration Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotat…

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pathml Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this ski…

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polars Fast DataFrame library (Apache Arrow). Select, filter, group_by, joins, lazy evaluation, CSV/Parquet I/O, expression …

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protocolsio-integration Integration with protocols.io API for managing scientific protocols. This skill should be used when working with prot…

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pylabrobot Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, cent…

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pysam Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, c…

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pytdc Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molec…

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pytorch-lightning Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for mult…

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scikit-survival Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skil…

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string-database Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichm…

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umap-learn UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HD…

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tdd-reference On-demand TDD guideline access without loading full documentation into context. Provides targeted guidance for RED-GR…

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bulk-github-skills-downloader Discover, clone, and consolidate Claude Code skills from many GitHub repositories at once. Use when bulk-downloading …

jackspace/claudeskillz

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