hkphysics/scientific-agent-skills

1

citation-management Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurat…

hkphysics/scientific-agent-skills

47

2

astropy Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coor…

hkphysics/scientific-agent-skills

46

3

aeon This skill should be used for time series machine learning tasks including classification, regression, clustering, fo…

hkphysics/scientific-agent-skills

45

4

hugging-science Use when the user is doing AI/ML work in a scientific domain such as biology, chemistry, physics, astronomy, climate,…

hkphysics/scientific-agent-skills

45

5

sympy Use when you need exact symbolic math in Python — algebra, calculus, equation solving, symbolic linear algebra, or co…

hkphysics/scientific-agent-skills

45

6

pyzotero Interact with Zotero reference management libraries using the pyzotero Python client.

hkphysics/scientific-agent-skills

44

7

scientific-critical-thinking Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases a…

hkphysics/scientific-agent-skills

44

8

fluidsim Framework for computational fluid dynamics simulations using Python.

hkphysics/scientific-agent-skills

43

9

markitdown Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transc…

hkphysics/scientific-agent-skills

43

10

matplotlib Low-level plotting library for full customization.

hkphysics/scientific-agent-skills

43

11

scientific-brainstorming Creative research ideation and exploration.

hkphysics/scientific-agent-skills

43

12

scientific-visualization Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts,…

hkphysics/scientific-agent-skills

43

13

simpy Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with…

hkphysics/scientific-agent-skills

43

14

seaborn Statistical visualization with pandas integration.

hkphysics/scientific-agent-skills

42

15

statsmodels Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with …

hkphysics/scientific-agent-skills

42

16

scholar-evaluation Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across resear…

hkphysics/scientific-agent-skills

2

17

anndata Data structure for annotated matrices in single-cell analysis.

hkphysics/scientific-agent-skills

1

18

arbor Autonomously improve a real artifact (code, training recipe, agent harness, data pipeline, prompt) against an objecti…

hkphysics/scientific-agent-skills

1

19

autoskill Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-…

hkphysics/scientific-agent-skills

1

20

bgpt-paper-search Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP …

hkphysics/scientific-agent-skills

1

21

bids Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical…

hkphysics/scientific-agent-skills

1

22

biopython Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogeneti…

hkphysics/scientific-agent-skills

1

23

exa-search Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search …

hkphysics/scientific-agent-skills

1

24

experimental-design Design experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out tr…

hkphysics/scientific-agent-skills

1

25

exploratory-data-analysis Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should …

hkphysics/scientific-agent-skills

1

26

generate-image Generate or edit images using AI models (FLUX, Nano Banana 2).

hkphysics/scientific-agent-skills

1

27

research-grants Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review cr…

hkphysics/scientific-agent-skills

1

28

research-lookup Look up current research information using parallel-cli search (primary, fast web search), the Parallel Chat API (dee…

hkphysics/scientific-agent-skills

1

29

scientific-schematics Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement.

hkphysics/scientific-agent-skills

1

30

scientific-slides Build slide decks and presentations for research talks.

hkphysics/scientific-agent-skills

1

31

scientific-writing Core skill for the deep research and writing tool.

hkphysics/scientific-agent-skills

1

32

venue-templates Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publica…

hkphysics/scientific-agent-skills

1

33

what-if-oracle Run structured What-If scenario analysis with 4–6 branch possibility exploration (best, likely, worst, wild card, con…

hkphysics/scientific-agent-skills

1

34

xlsx Create, edit, analyze, or convert Excel spreadsheets (.xlsx, .xlsm) where the workbook file is the primary deliverabl…

hkphysics/scientific-agent-skills

1