google-deepmind/science-skills

5478

literature-search-arxiv Search for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-te…

google-deepmind/science-skills

3.2K

5972

literature-search-openalex Query the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funder…

google-deepmind/science-skills

3K

6699

pubmed-database Search PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link pub…

google-deepmind/science-skills

2.6K

6948

literature-search-europepmc Search Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plai…

google-deepmind/science-skills

2.5K

7155

literature-search-biorxiv Browse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv. Supports fetchin…

google-deepmind/science-skills

2.4K

7227

uv >- Checks whether the uv Python package manager is installed and installs it if missing. Ensures uv is on PATH. Use w…

google-deepmind/science-skills

2.3K

7264

workflow-skill-creator Distills a completed user workflow or interaction into a reusable agent skill. Use when the user asks to turn their w…

google-deepmind/science-skills

2.3K

7364

clinical-trials-database Query ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or p…

google-deepmind/science-skills

2.3K

7553

alphafold-database-fetch-and-analyze Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Acce…

google-deepmind/science-skills

2.2K

7554

pdb-database Use when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucle…

google-deepmind/science-skills

2.2K

7565

pubchem-database Query PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for che…

google-deepmind/science-skills

2.1K

7576

pymol Visualize, analyze, and render protein and molecular structures using PyMOL. Use when the user wants to create images…

google-deepmind/science-skills

2.1K

7583

ncbi-sequence-fetch Retrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CD…

google-deepmind/science-skills

2.1K

7594

openfda-database Query, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veter…

google-deepmind/science-skills

2.1K

7627

uniprot-database Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef. Use when searching …

google-deepmind/science-skills

2.1K

7640

alphagenome-single-variant-analysis Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP),…

google-deepmind/science-skills

2.1K

7644

chembl-database Query the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical struc…

google-deepmind/science-skills

2.1K

7645

clinvar-database Use when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evide…

google-deepmind/science-skills

2.1K

7673

ensembl-database Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve…

google-deepmind/science-skills

2.1K

7692

opentargets-database Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetic…

google-deepmind/science-skills

2.1K

7695

protein-sequence-similarity-search Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback). Trigger t…

google-deepmind/science-skills

2.1K

7696

protein-sequence-msa Performs multiple sequence alignment of proteins with EBI Clustal Omega. Use when you need to align multiple sequence…

google-deepmind/science-skills

2.1K

7699

dbsnp-database Use when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Res…

google-deepmind/science-skills

2.1K

7701

human-protein-atlas-database Use when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Prote…

google-deepmind/science-skills

2.1K

7706

embl-ebi-ols Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchi…

google-deepmind/science-skills

2.1K

7713

reactome-database Query the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list…

google-deepmind/science-skills

2.1K

7716

interpro-database Identify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species…

google-deepmind/science-skills

2.1K

7722

foldseek-structural-search Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the …

google-deepmind/science-skills

2.1K

7726

string-database Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the …

google-deepmind/science-skills

2.1K

7754

gnomad-database Query the Genome Aggregation Database (gnomAD). Use when determining the rarity or allele frequency of specific genet…

google-deepmind/science-skills

2.1K

7751

gtex-database Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-T…

google-deepmind/science-skills

2.1K

7759

jaspar-database Query the JASPAR database for Transcription Factor (TF) binding profiles. Use when retrieving Position Frequency Matr…

google-deepmind/science-skills

2.1K

7757

quickgo-database Query the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biologica…

google-deepmind/science-skills

2.1K

7779

encode-ccres-database Query the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to th…

google-deepmind/science-skills

2K

7819

ucsc-conservation-and-tfbs Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCS…

google-deepmind/science-skills

2K

7831

unibind-database Queries the UniBind database for experimentally validated transcription factor (TF) binding sites. Use when retrievin…

google-deepmind/science-skills

2K

37

credentials >- Instructions for handling API keys and credentials safely, verifying their presence, and prompting the user to add…

google-deepmind/science-skills

900

38

predictingthepast Ancient text restoration, attribution, dating, contextualization, and embedding via Aeneas (Latin) / Ithaca (Ancient …

google-deepmind/science-skills

759

39

scienceskillscommon Shared Python package for Science Skills, currently containing http_client -- a unified HTTP client with rate limitin…

google-deepmind/science-skills

713

40

science-skills-common Shared Python package for Science Skills, currently containing http_client -- a unified HTTP client with rate limitin…

google-deepmind/science-skills

334

41

alphagenome-atlas-website-links Constructs deep-links and URLs for the AlphaGenome Atlas website. Supports generating single-variant exploration link…

google-deepmind/science-skills

40

42

alphagenome-variant-impact-score Score, annotate, and analyze the functional impact of genetic variants using AlphaGenome Variant Impact (AVI) scores.…

google-deepmind/science-skills

39