eturkes/claude-scientific-skills

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matlab MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computi…

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statistical-analysis Guided statistical analysis with test selection and reporting.

eturkes/claude-scientific-skills

43

3

molecular-dynamics Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis.

eturkes/claude-scientific-skills

37

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matplotlib Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, cr…

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33

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open-notebook Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when org…

eturkes/claude-scientific-skills

33

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pyzotero Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and d…

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29

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database-lookup Deterministically query 78 public scientific, biomedical, materials science, regulatory, finance, and demographics da…

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28

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geomaster Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth obs…

eturkes/claude-scientific-skills

28

9

paper-lookup Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles.

eturkes/claude-scientific-skills

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10

scientific-schematics Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement.

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27

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scientific-slides Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentatio…

eturkes/claude-scientific-skills

27

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scientific-writing Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet poin…

eturkes/claude-scientific-skills

27

13

generate-image Generate or edit images using AI models (FLUX, Nano Banana 2).

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26

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research-grants Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review cr…

eturkes/claude-scientific-skills

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15

torch-geometric PyTorch Geometric (PyG) for graph neural networks — node/link/graph classification, message passing (GCN, GAT, GraphS…

eturkes/claude-scientific-skills

26

16

optimize-for-gpu GPU-accelerate Python code using CuPy, Numba CUDA, Warp, cuDF, cuML, cuGraph, KvikIO, cuCIM, cuxfilter, cuVS, cuSpati…

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phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (…

eturkes/claude-scientific-skills

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scientific-visualization Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts,…

eturkes/claude-scientific-skills

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citation-management Comprehensive citation management for academic research.

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24

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dask Distributed computing for larger-than-RAM pandas/NumPy workflows.

eturkes/claude-scientific-skills

24

21

fluidsim Framework for computational fluid dynamics simulations using Python.

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get-available-resources This skill should be used at the start of any computationally intensive scientific task to detect and report availabl…

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histolab Lightweight WSI tile extraction and preprocessing.

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latex-posters Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference pre…

eturkes/claude-scientific-skills

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markdown-mermaid-writing Comprehensive markdown and Mermaid diagram writing skill.

eturkes/claude-scientific-skills

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peer-review Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specifi…

eturkes/claude-scientific-skills

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scientific-critical-thinking Evaluate scientific claims and evidence quality.

eturkes/claude-scientific-skills

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28

bgpt-paper-search Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP …

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clinical-reports Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/patholog…

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consciousness-council Run a multi-perspective Mind Council deliberation on any question, decision, or creative challenge. Use this skill wh…

eturkes/claude-scientific-skills

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exploratory-data-analysis Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should …

eturkes/claude-scientific-skills

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hypothesis-generation Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to …

eturkes/claude-scientific-skills

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infographics Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for qual…

eturkes/claude-scientific-skills

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literature-review Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Seman…

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35

neurokit2 Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, a…

eturkes/claude-scientific-skills

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omero-integration Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotat…

eturkes/claude-scientific-skills

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scvi-tools Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learn…

eturkes/claude-scientific-skills

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stable-baselines3 Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use fo…

eturkes/claude-scientific-skills

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statsmodels Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with …

eturkes/claude-scientific-skills

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timesfm-forecasting Zero-shot time series forecasting with Google's TimesFM foundation model. Use for any univariate time series (sales, …

eturkes/claude-scientific-skills

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41

aeon This skill should be used for time series machine learning tasks including classification, regression, clustering, fo…

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anndata Data structure for annotated matrices in single-cell analysis.

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arboreto Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use wh…

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cellxgene-census Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use…

eturkes/claude-scientific-skills

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cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biolog…

eturkes/claude-scientific-skills

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datamol Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery …

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docx Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers in…

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esm Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFo…

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flowio Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert t…

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gget Fast CLI/Python queries to 20+ bioinformatics databases.

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