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crazymsn/academic-skills

139 skills · 4.9K combined installs

Skills from this source

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Skill
Source
8W Activity
Installs
1
statistical-analysis Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for …
crazymsn/academic-skills
66
2
scientific-schematics Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.…
crazymsn/academic-skills
46
3
paper-lookup Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMe…
crazymsn/academic-skills
45
4
peer-review Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specifi…
crazymsn/academic-skills
45
5
market-research-reports Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartn…
crazymsn/academic-skills
44
6
research-lookup Look up current research information using parallel-cli search (primary, fast web search), the Parallel Chat API (dee…
crazymsn/academic-skills
44
7
geomaster Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth obs…
crazymsn/academic-skills
42
8
citation-management Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurat…
crazymsn/academic-skills
39
9
infographics Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for qual…
crazymsn/academic-skills
39
10
scientific-visualization Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts,…
crazymsn/academic-skills
39
11
clinical-reports Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/patholog…
crazymsn/academic-skills
38
12
venue-templates Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publica…
crazymsn/academic-skills
38
13
clinical-decision-support Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, in…
crazymsn/academic-skills
37
14
database-lookup Search 78 public scientific, biomedical, materials science, and economic databases via REST APIs. Covers physics/astr…
crazymsn/academic-skills
37
15
literature-review Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Seman…
crazymsn/academic-skills
37
16
markdown-mermaid-writing Comprehensive markdown and Mermaid diagram writing skill. Use when creating any scientific document, report, analysis…
crazymsn/academic-skills
37
17
matplotlib Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, cr…
crazymsn/academic-skills
37
18
open-notebook Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when org…
crazymsn/academic-skills
37
19
research-grants Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review cr…
crazymsn/academic-skills
37
20
bids Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical…
crazymsn/academic-skills
36
21
hugging-science Use for scientific AI/ML discovery and implementation across biology, chemistry, physics, astronomy, climate, genomic…
crazymsn/academic-skills
36
22
neurokit2 Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, a…
crazymsn/academic-skills
36
23
phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (…
crazymsn/academic-skills
36
24
pptx-posters
crazymsn/academic-skills
36
25
scholar-evaluation Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across resear…
crazymsn/academic-skills
36
26
scientific-brainstorming Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary co…
crazymsn/academic-skills
36
27
scientific-writing Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet poin…
crazymsn/academic-skills
36
28
scvelo RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajec…
crazymsn/academic-skills
36
29
bgpt-paper-search Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP …
crazymsn/academic-skills
35
30
bioservices Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL,…
crazymsn/academic-skills
35
31
cellxgene-census Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases,…
crazymsn/academic-skills
35
32
deepchem Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with trad…
crazymsn/academic-skills
35
33
dhdna-profiler Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how…
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35
34
exploratory-data-analysis Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should …
crazymsn/academic-skills
35
35
geopandas Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when …
crazymsn/academic-skills
35
36
gget Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold …
crazymsn/academic-skills
35
37
histolab Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, …
crazymsn/academic-skills
35
38
hypothesis-generation Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to …
crazymsn/academic-skills
35
39
iso-13485-certification Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Syste…
crazymsn/academic-skills
35
40
matlab MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computi…
crazymsn/academic-skills
35
41
molecular-dynamics Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, def…
crazymsn/academic-skills
35
42
omero-integration Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotat…
crazymsn/academic-skills
35
43
optimize-for-gpu GPU-accelerate Python code using CuPy, Numba CUDA, Warp, cuDF, cuML, cuGraph, KvikIO, cuCIM, cuxfilter, cuVS, cuSpati…
crazymsn/academic-skills
35
44
polars Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in mem…
crazymsn/academic-skills
35
45
pptx Use this skill any time a .pptx file is involved in any way — as input, output, or both. This includes: creating slid…
crazymsn/academic-skills
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46
pyhealth Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, …
crazymsn/academic-skills
35
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pymatgen Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project i…
crazymsn/academic-skills
35
48
scanpy Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE),…
crazymsn/academic-skills
35
49
scientific-slides Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentatio…
crazymsn/academic-skills
35
50
scikit-learn Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression),…
crazymsn/academic-skills
35
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