Source

awslabs/hcls-agent-skills

41 skills · 370 combined installs

Skills from this source

#
Skill
Source
8W Activity
Installs
1
claims-billing-rules Reasoning skill for healthcare claims billing rules and fraud detection logic. Use when the user asks about CMS billi…
awslabs/hcls-agent-skills
11
2
clinical-data-standards Reason about clinical data terminology standards — MedDRA hierarchy (LLT→PT→HLT→HLGT→SOC), ICD-10 code structure and …
awslabs/hcls-agent-skills
11
3
dicom-processing DICOM and NIfTI medical image processing pipeline. Triggers on DICOM, NIfTI, dcm2niix, de-identification, pydicom, DI…
awslabs/hcls-agent-skills
11
4
edc-data-validation Generate code for EDC export validation, clinical data range checks, cross-form consistency checks, SDTM structure va…
awslabs/hcls-agent-skills
11
5
ehr-data-parsing Parse and extract clinical data from HL7v2 messages and FHIR R4 resources using Python. Use when the user mentions HL…
awslabs/hcls-agent-skills
11
6
imaging-study-design Reasoning skill for medical imaging study design and biomarker selection. Use when the user asks to plan an imaging s…
awslabs/hcls-agent-skills
11
7
ml-researcher Reason about ML experiment design for healthcare and life sciences data. Use when the user asks to design an ML study…
awslabs/hcls-agent-skills
11
8
aws-genai-ml-architect Reasoning skill for designing AWS GenAI and ML architectures for healthcare and life sciences workloads. Use when the…
awslabs/hcls-agent-skills
10
9
claims-analytics Pipeline skill for healthcare claims data parsing, analysis, and fraud detection. Use when the user asks to parse X12…
awslabs/hcls-agent-skills
10
10
digital-pathology Generate correct code for whole-slide image (WSI) analysis using TIAToolbox and foundation models (H-optimus-0, UNI, …
awslabs/hcls-agent-skills
10
11
pharmacoepidemiology Reason about pharmacoepidemiologic study design for causal inference from real-world data — choosing active comparato…
awslabs/hcls-agent-skills
10
12
radiology-preprocessing Structural MRI/CT preprocessing pipeline for radiology workflows covering skull stripping, bias field correction, reg…
awslabs/hcls-agent-skills
10
13
risk-adjustment Pipeline skill for CMS-HCC risk adjustment calculation and coding gap identification. Use when the user asks to apply…
awslabs/hcls-agent-skills
10
14
risk-adjustment-strategy Reasoning skill for CMS-HCC risk adjustment strategy and methodology. Use when the user asks about CMS-HCC model vers…
awslabs/hcls-agent-skills
10
15
risk-stratification-indices Reasoning skill for clinical risk stratification index selection and interpretation. Use when the user asks about LAC…
awslabs/hcls-agent-skills
10
16
rwd-cohort-analysis Real-world data cohort analysis pipeline for claims and EHR data — cohort identification with ICD-10, NDC, and CPT co…
awslabs/hcls-agent-skills
10
17
cdisc-compliance Reason about CDISC SDTM and ADaM implementation for regulatory submissions. Use when the user asks about SDTM domain …
awslabs/hcls-agent-skills
9
18
genomic-variant-interpretation Reason about germline and somatic variant classification using ACMG/AMP 2015 and AMP/ASCO/CAP frameworks. Use when th…
awslabs/hcls-agent-skills
9
19
hedis-measure-specification Reasoning skill for HEDIS measure specification, enrollment logic, exclusion evaluation, NCQA audit requirements, and…
awslabs/hcls-agent-skills
9
20
multi-omics-integration Reasoning skill for multi-omics data integration strategy selection. Use when the user asks to integrate transcriptom…
awslabs/hcls-agent-skills
9
21
multi-omics-pipeline Pipeline skill for multi-omics data processing and integration. Use when the user asks to map gene IDs between HGNC E…
awslabs/hcls-agent-skills
9
22
ngs-quality-control NGS quality control pipeline for short-read sequencing data. Triggers on FastQC, QC, quality control, adapter trimmin…
awslabs/hcls-agent-skills
9
23
pa-clinical-policy Reasoning skill for prior authorization clinical policy evaluation. Use when the user asks about payer clinical crite…
awslabs/hcls-agent-skills
9
24
pa-decision-automation Pipeline skill for automating prior authorization decision workflows. Use when the user asks to parse PA request data…
awslabs/hcls-agent-skills
9
25
quality-measures Pipeline skill for computing HEDIS quality measures from claims and clinical data. Use when the user asks to calculat…
awslabs/hcls-agent-skills
9
26
quantitative-proteomics Reason about quantitative proteomics experiment design and data analysis strategy. Use when the user asks to choose b…
awslabs/hcls-agent-skills
9
27
trajectory-analysis Single-cell trajectory inference pipeline covering diffusion pseudotime (DPT), PAGA, RNA velocity with scVelo, and fa…
awslabs/hcls-agent-skills
9
28
translational-research Reason about translational research problems in HCLS — especially neurology and hypothesis validation. Use when the u…
awslabs/hcls-agent-skills
9
29
variant-calling Germline and somatic short-variant calling pipeline for Illumina short-read data. Use when the user mentions BWA, BWA…
awslabs/hcls-agent-skills
9
30
biomarker-discovery Reason about biomarker discovery and validation in HCLS — classifying biomarker intent, choosing feature-selection an…
awslabs/hcls-agent-skills
8
31
cell-type-annotation Generate code to assign cell type labels to single-cell RNA-seq clusters using CellTypist, SingleR, marker-based anno…
awslabs/hcls-agent-skills
8
32
cheminformatics Cheminformatics pipeline for small-molecule property calculation, filtering, and similarity analysis using RDKit. Use…
awslabs/hcls-agent-skills
8
33
drug-repurposing Reason about drug repurposing strategies in HCLS — choosing between target-based and phenotype-based approaches, eval…
awslabs/hcls-agent-skills
8
34
molecular-docking Molecular docking pipeline using AutoDock Vina for structure-based drug discovery. Triggers on docking, AutoDock Vina…
awslabs/hcls-agent-skills
8
35
protein-structure-analysis Pipeline skill for protein structure analysis covering PDB/mmCIF parsing, RMSD superposition, Ramachandran/dihedral a…
awslabs/hcls-agent-skills
8
36
rna-seq-analysis Bulk RNA-seq analysis pipeline covering alignment (STAR), quantification (Salmon, featureCounts), and differential ex…
awslabs/hcls-agent-skills
8
37
scrna-seq-pipeline Scanpy-based single-cell RNA-seq analysis pipeline covering loading (10X, h5ad), QC, normalization, HVG selection, PC…
awslabs/hcls-agent-skills
8
38
structure-based-drug-design Reasoning skill for structure-based drug design strategy. Use when the user asks to assess target druggability, choos…
awslabs/hcls-agent-skills
8
39
provider-denial-workup Reasoning skill for healthcare revenue cycle denial management. Use when the user needs to appeal a claim denial, dra…
awslabs/hcls-agent-skills
6
40
coordination-of-benefits Reasoning skill for Coordination of Benefits (COB) determination in healthcare claims. Use when a claim involves mult…
awslabs/hcls-agent-skills
4
41
medical-device-software-compliance Reason about SaMD (Software as a Medical Device) regulatory compliance for FDA, EU MDR, and global submissions. Use w…
awslabs/hcls-agent-skills
4