alterlab-ieu/alterlab-academic-skills

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alterlab-yok-akademik Looks up a Turkish academic's official YOKSIS-backed profile, current affiliation, unvan (academic title), publicatio…

alterlab-ieu/alterlab-academic-skills

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alterlab-yok-tez Searches YÖK Ulusal Tez Merkezi (tez.yok.gov.tr/UlusalTezMerkezi), Turkey's mandatory national graduate-thesis reposi…

alterlab-ieu/alterlab-academic-skills

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alterlab-akademik-tesvik Computes the annual Turkish academic-incentive (akademik teşvik) score for Devlet (state) university öğretim elemanı …

alterlab-ieu/alterlab-academic-skills

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alterlab-aperta Drives TÜBİTAK Açık Bilim Politikası (Open Science Policy) compliance and deposition into Aperta — TÜBİTAK ULAKBİM's …

alterlab-ieu/alterlab-academic-skills

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alterlab-docentlik-eligibility Runs a PARTIAL pre-screen of a Turkish associate-professorship (doçentlik) publication list against the ÜAK (Üniversi…

alterlab-ieu/alterlab-academic-skills

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alterlab-kvkk-dmp Produces KVKK-compliant (Law 6698, as amended by Law 7499 — published in the Official Gazette 12 Mar 2024, KVKK provi…

alterlab-ieu/alterlab-academic-skills

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alterlab-preprint-deposition Drives preprint deposition across servers (arXiv, bioRxiv, medRxiv, SSRN, OSF Preprints): picks the right server by f…

alterlab-ieu/alterlab-academic-skills

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alterlab-redcap-cdisc Designs validated research data-capture instruments and aligns them to CDISC submission standards. Builds REDCap proj…

alterlab-ieu/alterlab-academic-skills

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alterlab-tr-research-ethics Scaffolds Turkish human-subjects etik kurul (ethics committee) applications and routes a study to the correct committ…

alterlab-ieu/alterlab-academic-skills

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alterlab-trdizin Searches TR Dizin (TÜBİTAK ULAKBİM national citation index) and verifies a journal's current national-index status th…

alterlab-ieu/alterlab-academic-skills

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alterlab-yokatlas Retrieves Türkiye higher-education program and admission statistics from YÖK Atlas (yokatlas.yok.gov.tr) — quotas (ko…

alterlab-ieu/alterlab-academic-skills

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alterlab-qualitative-analysis Analyzes qualitative data as a dispatched pipeline module — codebook development, thematic / framework / content anal…

alterlab-ieu/alterlab-academic-skills

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alterlab-ssci-reflexivity-gate Gates trustworthiness before qualitative or interpretivist claims are written — the qualitative analog of the measure…

alterlab-ieu/alterlab-academic-skills

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alterlab-alphafold Predict protein 3D structures with AlphaFold2 via ColabFold — MMseqs2-accelerated MSAs, monomer and AlphaFold2-Multim…

alterlab-ieu/alterlab-academic-skills

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alterlab-boltz Co-fold biomolecular complexes with Boltz-2, an open AlphaFold3-style model — predict protein + ligand (SMILES/CCD), …

alterlab-ieu/alterlab-academic-skills

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alterlab-borzoi Predict genome-wide functional genomics tracks from DNA sequence with Borzoi (Linder 2025) — a sequence-to-function m…

alterlab-ieu/alterlab-academic-skills

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alterlab-causal-inference Estimates causal effects from observational and quasi-experimental data — difference-in-differences, instrumental var…

alterlab-ieu/alterlab-academic-skills

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alterlab-chai Predict biomolecular complexes with Chai-1, an open AlphaFold3-style model that folds multi-entity assemblies (protei…

alterlab-ieu/alterlab-academic-skills

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alterlab-figure-qa Verify publication figures with a render-then-check QA pass — data-fidelity against every underlying row, axis/label …

alterlab-ieu/alterlab-academic-skills

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alterlab-rfdiffusion Generate de-novo protein backbones with RFdiffusion (Watson 2023) — a diffusion model for unconditional monomer gener…

alterlab-ieu/alterlab-academic-skills

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alterlab-sna Applies social-network-analysis method discipline to relational data — degree/betweenness/closeness/eigenvector centr…

alterlab-ieu/alterlab-academic-skills

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alterlab-ssci-sampling-gate Gates who is sampled, how, and how many before data collection — checks that the sampling FRAME matches the target po…

alterlab-ieu/alterlab-academic-skills

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alterlab-text-as-data Analyzes text as social-science data — topic modeling (BERTopic with embeddings + class-based TF-IDF, LDA/NMF via sci…

alterlab-ieu/alterlab-academic-skills

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alterlab-abm-mesa Builds agent-based models of social systems with Mesa 3 — the current AgentSet API (model.agents.shuffle_do('step'), …

alterlab-ieu/alterlab-academic-skills

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alterlab-ligandmpnn Design protein sequences around bound ligands, metals, and nucleic acids with LigandMPNN (Dauparas 2023) — inverse fo…

alterlab-ieu/alterlab-academic-skills

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alterlab-missing-data Handles missing data with principled methods — forces an explicit MCAR / MAR / MNAR mechanism statement, then applies…

alterlab-ieu/alterlab-academic-skills

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alterlab-multilevel-models Fits and reports mixed-effects / multilevel / hierarchical models for clustered, nested, longitudinal, and repeated-m…

alterlab-ieu/alterlab-academic-skills

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alterlab-proteinmpnn Design protein sequences for a fixed backbone with ProteinMPNN (Dauparas 2022) — message-passing inverse folding that…

alterlab-ieu/alterlab-academic-skills

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alterlab-remote-compute Dispatch long-running GPU/CPU jobs to remote compute with a provider-agnostic submit → poll → harvest pattern across …

alterlab-ieu/alterlab-academic-skills

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alterlab-scgpt Apply the scGPT single-cell foundation model (Cui 2024) to annotate and embed cells — zero-shot and fine-tuned cell-t…

alterlab-ieu/alterlab-academic-skills

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alterlab-ssci-inference-gate Audits final inferential claims against the design, sample, and uncertainty before they are written or published — re…

alterlab-ieu/alterlab-academic-skills

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alterlab-ssci-measurement-gate Gates measurement quality before a scale or instrument is trusted — checks that each construct is defined and operati…

alterlab-ieu/alterlab-academic-skills

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alterlab-ssci-orchestrator Coordinates a social-science study through the stage-gated methods pipeline — question then design-gate then measurem…

alterlab-ieu/alterlab-academic-skills

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alterlab-survey-analysis Analyzes complex-sample survey data with design-based inference — declares a survey design (weights, strata, PSUs/clu…

alterlab-ieu/alterlab-academic-skills

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alterlab-meta-analysis Runs quantitative meta-analysis — computes effect sizes (Hedges' g / standardized mean difference, log odds/risk rati…

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alterlab-pdf-explore Explore a single PDF in depth — parse it once, then answer questions across its sections, figures, tables, and append…

alterlab-ieu/alterlab-academic-skills

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alterlab-qca Runs Qualitative Comparative Analysis — crisp-set (csQCA), multi-value (mvQCA), and fuzzy-set (fsQCA) — for small-to-…

alterlab-ieu/alterlab-academic-skills

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alterlab-sem-psychometrics Fits and evaluates measurement models — confirmatory factor analysis, full structural equation models, exploratory fa…

alterlab-ieu/alterlab-academic-skills

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alterlab-skill-finder The AlterLab front door and multi-agent launcher — routes a task to the right AlterLab skill(s) when the user invokes…

alterlab-ieu/alterlab-academic-skills

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alterlab-ssci-design-gate Routes a social-science study to its research design — true experiment, quasi-experiment (difference-in-differences, …

alterlab-ieu/alterlab-academic-skills

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alterlab-docx Part of the AlterLab Academic Skills suite. Use this skill whenever the user wants to create, read, edit, or manipula…

alterlab-ieu/alterlab-academic-skills

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alterlab-pdf Part of the AlterLab Academic Skills suite. Use this skill whenever the user wants to do anything with PDF files. Thi…

alterlab-ieu/alterlab-academic-skills

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alterlab-pptx Part of the AlterLab Academic Skills suite. Use this skill any time a .pptx file is involved in any way — as input, o…

alterlab-ieu/alterlab-academic-skills

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alterlab-xlsx Part of the AlterLab Academic Skills suite. Use this skill any time a spreadsheet file is the primary input or output…

alterlab-ieu/alterlab-academic-skills

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alterlab-consciousness-council Part of the AlterLab Academic Skills suite. Run a multi-perspective Mind Council deliberation on any question, decisi…

alterlab-ieu/alterlab-academic-skills

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